Variant report

Variant	rs12254959
Chromosome Location	chr10:97279964-97279965
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97271514..97273430-chr10:97278974..97280871,3	K562	blood:
2	chr10:97277519..97280426-chr10:97289369..97291949,2	K562	blood:
3	chr10:97274675..97276217-chr10:97279235..97281158,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10882606	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882608	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882610	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10882611	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188338	0.92[ASN][1000 genomes]
rs11188344	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188346	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188347	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188348	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188349	0.84[ASN][1000 genomes]
rs11188358	0.89[EUR][1000 genomes]
rs12776562	0.93[ASN][1000 genomes]
rs12776800	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1326932	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359722	0.87[ASN][1000 genomes]
rs1819288	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1887226	0.88[EUR][1000 genomes]
rs35764302	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4572071	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6584004	0.80[ASN][1000 genomes]
rs7918060	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7922126	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97269000-97282600	Weak transcription	Fetal Kidney	kidney
2	chr10:97270600-97283400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:97271000-97281200	Enhancers	Right Ventricle	heart
4	chr10:97271600-97284600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:97273600-97284000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:97274400-97280400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:97276600-97283400	Enhancers	Fetal Brain Male	brain
8	chr10:97276800-97280000	Enhancers	Fetal Stomach	stomach
9	chr10:97277000-97284200	Enhancers	Fetal Brain Female	brain
10	chr10:97277800-97280800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:97278000-97284000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:97278000-97294000	Weak transcription	Esophagus	oesophagus
13	chr10:97278800-97280400	Weak transcription	Fetal Intestine Small	intestine
14	chr10:97278800-97280800	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:97278800-97282000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:97279000-97281800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:97279000-97282000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:97279000-97284000	Weak transcription	Psoas Muscle	Psoas
19	chr10:97279000-97284000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:97279200-97280200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:97279200-97280200	Weak transcription	Fetal Intestine Large	intestine
22	chr10:97279200-97280800	Weak transcription	Left Ventricle	heart
23	chr10:97279200-97280800	Weak transcription	Right Atrium	heart
24	chr10:97279200-97281000	Weak transcription	Gastric	stomach
25	chr10:97279200-97281000	Weak transcription	Ovary	ovary
26	chr10:97279200-97281000	Weak transcription	Stomach Mucosa	stomach
27	chr10:97279200-97281800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:97279200-97281800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr10:97279200-97281800	Weak transcription	Brain Germinal Matrix	brain
30	chr10:97279200-97282600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:97279200-97282600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr10:97279200-97282800	Weak transcription	HSMMtube	muscle
33	chr10:97279200-97285800	Weak transcription	Pancreas	Pancrea
34	chr10:97279200-97290400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr10:97279200-97290400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr10:97279200-97293200	Weak transcription	Fetal Lung	lung
37	chr10:97279400-97280200	Weak transcription	Aorta	Aorta
38	chr10:97279400-97282000	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr10:97279400-97282000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:97279400-97282200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr10:97279400-97283800	Weak transcription	K562	blood
42	chr10:97279400-97285800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:97279600-97281000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr10:97279600-97281800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr10:97279600-97282200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:97279600-97284000	Weak transcription	Liver	Liver
47	chr10:97279600-97284800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:97279800-97280000	Enhancers	Lung	lung
49	chr10:97279800-97280200	Enhancers	Stomach Smooth Muscle	stomach
50	chr10:97279800-97280400	Weak transcription	Rectal Smooth Muscle	rectum

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