Variant report

Variant	rs35764302
Chromosome Location	chr10:97299384-97299385
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97299249..97301273-chr10:97310241..97312398,2	K562	blood:
2	chr10:97284547..97287564-chr10:97299273..97302569,3	K562	blood:
3	chr10:97293527..97296505-chr10:97299046..97301710,3	K562	blood:
4	chr10:97298258..97302790-chr10:97302901..97306757,8	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10882606	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882608	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882610	0.84[EUR][1000 genomes]
rs10882611	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188344	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188346	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188347	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188348	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188349	0.96[ASN][1000 genomes]
rs11188358	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12254959	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12776800	0.84[EUR][1000 genomes]
rs1326932	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1359722	0.88[ASN][1000 genomes]
rs1819288	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1887226	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4572071	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7918060	0.84[EUR][1000 genomes]
rs7922126	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
2	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
3	chr10:97289200-97309000	Enhancers	Left Ventricle	heart
4	chr10:97289400-97303800	Weak transcription	HSMM	muscle
5	chr10:97290000-97301400	Enhancers	Rectal Smooth Muscle	rectum
6	chr10:97290600-97301800	Weak transcription	Ovary	ovary
7	chr10:97291200-97301000	Weak transcription	Fetal Brain Female	brain
8	chr10:97291800-97308600	Enhancers	Colon Smooth Muscle	Colon
9	chr10:97292200-97299600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:97292600-97299800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:97292600-97299800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:97292600-97300600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:97293000-97299600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:97293000-97299800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:97293000-97300400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:97293200-97302800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:97293400-97305400	Enhancers	Right Atrium	heart
18	chr10:97293400-97306000	Enhancers	Fetal Intestine Large	intestine
19	chr10:97293600-97299800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:97293600-97302000	Weak transcription	Adipose Nuclei	Adipose
21	chr10:97295000-97299400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr10:97295000-97305200	Enhancers	Stomach Mucosa	stomach
23	chr10:97296000-97299800	Weak transcription	Small Intestine	intestine
24	chr10:97296200-97299400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:97296200-97301400	Weak transcription	Colonic Mucosa	Colon
26	chr10:97296200-97306400	Enhancers	Liver	Liver
27	chr10:97296400-97302400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr10:97296400-97311400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr10:97296600-97299400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:97296600-97302800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:97296800-97312600	Weak transcription	Placenta	Placenta
32	chr10:97297000-97302600	Weak transcription	HSMMtube	muscle
33	chr10:97297200-97299800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:97297200-97300400	Weak transcription	Spleen	Spleen
35	chr10:97297200-97301400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:97297200-97302800	Weak transcription	Fetal Brain Male	brain
37	chr10:97297400-97299600	Weak transcription	Brain Angular Gyrus	brain
38	chr10:97297600-97299600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr10:97297600-97300200	Genic enhancers	Aorta	Aorta
40	chr10:97298200-97299800	Weak transcription	Psoas Muscle	Psoas
41	chr10:97298200-97301400	Weak transcription	Esophagus	oesophagus
42	chr10:97298200-97302000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr10:97298200-97305000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:97298200-97308200	Enhancers	Fetal Muscle Leg	muscle
45	chr10:97298400-97299400	Weak transcription	Right Ventricle	heart
46	chr10:97298400-97300600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:97298400-97300600	Weak transcription	Gastric	stomach
48	chr10:97298400-97300600	Weak transcription	Lung	lung
49	chr10:97298400-97300800	Enhancers	Fetal Intestine Small	intestine
50	chr10:97298400-97305200	Enhancers	Duodenum Smooth Muscle	Duodenum

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