Variant report

Variant	rs11188347
Chromosome Location	chr10:97294899-97294900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97293527..97296505-chr10:97299046..97301710,3	K562	blood:
2	chr10:97290800..97293543-chr10:97293667..97298455,5	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10882606	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882608	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882610	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10882611	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188338	0.85[ASN][1000 genomes]
rs11188344	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188346	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188348	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188349	0.94[ASN][1000 genomes]
rs11188358	0.89[EUR][1000 genomes]
rs12254959	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12776562	0.86[ASN][1000 genomes]
rs12776800	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1326932	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1359722	0.97[ASN][1000 genomes]
rs1819288	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1887226	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35764302	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4572071	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7918060	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7922126	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
2	chr10:97281600-97296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:97281800-97295000	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
5	chr10:97283200-97296400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:97286200-97296000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:97289000-97295000	Enhancers	Right Ventricle	heart
8	chr10:97289200-97299200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:97289200-97309000	Enhancers	Left Ventricle	heart
10	chr10:97289400-97296200	Weak transcription	HSMMtube	muscle
11	chr10:97289400-97303800	Weak transcription	HSMM	muscle
12	chr10:97290000-97298600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:97290000-97301400	Enhancers	Rectal Smooth Muscle	rectum
14	chr10:97290400-97298800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:97290600-97301800	Weak transcription	Ovary	ovary
16	chr10:97291000-97295600	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:97291200-97297200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr10:97291200-97301000	Weak transcription	Fetal Brain Female	brain
19	chr10:97291600-97295000	Enhancers	Gastric	stomach
20	chr10:97291800-97296600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:97291800-97308600	Enhancers	Colon Smooth Muscle	Colon
22	chr10:97292000-97295800	Weak transcription	Placenta	Placenta
23	chr10:97292000-97298400	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr10:97292200-97299600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:97292400-97295000	Weak transcription	Stomach Mucosa	stomach
26	chr10:97292400-97298600	Enhancers	K562	blood
27	chr10:97292600-97299800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:97292600-97299800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:97292600-97300600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:97293000-97297400	Weak transcription	Pancreas	Pancrea
31	chr10:97293000-97298800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr10:97293000-97299600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr10:97293000-97299800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr10:97293000-97300400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr10:97293200-97297400	Enhancers	Fetal Stomach	stomach
36	chr10:97293200-97302800	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr10:97293400-97295800	Weak transcription	HepG2	liver
38	chr10:97293400-97305400	Enhancers	Right Atrium	heart
39	chr10:97293400-97306000	Enhancers	Fetal Intestine Large	intestine
40	chr10:97293600-97296200	Weak transcription	Liver	Liver
41	chr10:97293600-97296400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr10:97293600-97299800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr10:97293600-97302000	Weak transcription	Adipose Nuclei	Adipose
44	chr10:97293800-97296000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:97293800-97296600	Weak transcription	Primary hematopoietic stem cells	blood
46	chr10:97294000-97295000	Enhancers	Esophagus	oesophagus
47	chr10:97294000-97295000	Enhancers	Spleen	Spleen
48	chr10:97294000-97295200	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr10:97294000-97295400	Weak transcription	HUVEC	blood vessel
50	chr10:97294200-97295000	Genic enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links