Variant report

Variant	rs10882608
Chromosome Location	chr10:97284596-97284597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97280950..97286355-chr10:97287261..97290251,5	K562	blood:
2	chr10:97282540..97285200-chr10:97291326..97293754,3	K562	blood:
3	chr10:97284547..97287564-chr10:97299273..97302569,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10882606	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882610	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10882611	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188338	0.92[ASN][1000 genomes]
rs11188344	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188346	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188347	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188348	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188349	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11188358	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12254959	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12776562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12776800	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1326932	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359722	0.87[ASN][1000 genomes]
rs1819288	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1887226	0.88[EUR][1000 genomes]
rs35764302	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4572071	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6584004	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs7918060	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7922126	0.83[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97271600-97284600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:97278000-97294000	Weak transcription	Esophagus	oesophagus
3	chr10:97279200-97285800	Weak transcription	Pancreas	Pancrea
4	chr10:97279200-97290400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:97279200-97290400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:97279200-97293200	Weak transcription	Fetal Lung	lung
7	chr10:97279400-97285800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:97279600-97284800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:97279800-97284600	Weak transcription	Brain Substantia Nigra	brain
10	chr10:97279800-97288200	Weak transcription	HepG2	liver
11	chr10:97279800-97290600	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:97280400-97289000	Enhancers	Rectal Smooth Muscle	rectum
13	chr10:97280600-97291000	Enhancers	Colon Smooth Muscle	Colon
14	chr10:97280800-97285000	Enhancers	Right Atrium	heart
15	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
16	chr10:97281000-97285600	Weak transcription	Fetal Intestine Small	intestine
17	chr10:97281200-97284600	Weak transcription	Right Ventricle	heart
18	chr10:97281600-97285800	Weak transcription	Gastric	stomach
19	chr10:97281600-97289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:97281600-97296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:97281800-97295000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr10:97282200-97285200	Enhancers	Brain Angular Gyrus	brain
23	chr10:97282200-97285400	Enhancers	Brain Cingulate Gyrus	brain
24	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
25	chr10:97282400-97288800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:97282400-97292000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:97282400-97292000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:97282600-97286600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:97282800-97285800	Weak transcription	Aorta	Aorta
30	chr10:97282800-97287400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr10:97282800-97288800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:97283000-97292000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:97283200-97296400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:97283400-97286000	Weak transcription	Fetal Brain Male	brain
35	chr10:97283400-97287000	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr10:97283600-97284800	Weak transcription	Brain Hippocampus Middle	brain
37	chr10:97283600-97284800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr10:97283600-97286000	Weak transcription	Stomach Mucosa	stomach
39	chr10:97283800-97284600	Weak transcription	Brain Anterior Caudate	brain
40	chr10:97283800-97284800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:97284000-97284600	Genic enhancers	Left Ventricle	heart
42	chr10:97284000-97284600	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr10:97284000-97285000	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr10:97284000-97285000	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr10:97284200-97284600	Weak transcription	Liver	Liver
46	chr10:97284200-97285000	Enhancers	HSMMtube	muscle
47	chr10:97284200-97285200	Enhancers	Fetal Stomach	stomach
48	chr10:97284200-97289000	Weak transcription	Fetal Brain Female	brain
49	chr10:97284200-97289600	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr10:97284400-97284600	Flanking Active TSS	Stomach Smooth Muscle	stomach

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