Variant report

Variant	rs7918060
Chromosome Location	chr10:97277799-97277800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97277519..97280426-chr10:97289369..97291949,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10882603	0.84[YRI][hapmap]
rs10882606	0.88[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10882608	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10882609	0.81[ASN][1000 genomes]
rs10882610	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882611	0.87[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188343	0.84[ASN][1000 genomes]
rs11188344	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188346	0.87[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188347	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11188348	0.88[EUR][1000 genomes]
rs11188349	1.00[JPT][hapmap]
rs11188358	0.84[EUR][1000 genomes]
rs12254959	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12776562	1.00[JPT][hapmap]
rs12776800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1326932	0.87[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1326934	0.85[ASN][1000 genomes]
rs1819288	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1887226	0.83[EUR][1000 genomes]
rs1952232	0.81[ASN][1000 genomes]
rs35764302	0.84[EUR][1000 genomes]
rs4146489	0.81[ASN][1000 genomes]
rs4146490	0.81[ASN][1000 genomes]
rs4146491	0.81[ASN][1000 genomes]
rs4146492	0.81[ASN][1000 genomes]
rs4244316	0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs4572071	0.88[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4917695	0.86[ASN][1000 genomes]
rs6584007	0.81[ASN][1000 genomes]
rs7897540	0.81[ASN][1000 genomes]
rs7922126	0.88[CEU][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs943338	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97260000-97278400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97262400-97278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:97269000-97282600	Weak transcription	Fetal Kidney	kidney
4	chr10:97270600-97278200	Enhancers	Rectal Smooth Muscle	rectum
5	chr10:97270600-97278600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr10:97270600-97279200	Enhancers	Left Ventricle	heart
7	chr10:97270600-97279200	Enhancers	Right Atrium	heart
8	chr10:97270600-97279200	Enhancers	Stomach Mucosa	stomach
9	chr10:97270600-97283400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:97271000-97281200	Enhancers	Right Ventricle	heart
11	chr10:97271400-97279800	Enhancers	Fetal Muscle Leg	muscle
12	chr10:97271400-97279800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:97271600-97279800	Enhancers	Fetal Heart	heart
14	chr10:97271600-97284600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:97272800-97278600	Enhancers	HUVEC	blood vessel
16	chr10:97273000-97277800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:97273400-97279800	Enhancers	Colon Smooth Muscle	Colon
18	chr10:97273600-97284000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:97274200-97278600	Weak transcription	Fetal Lung	lung
20	chr10:97274200-97279200	Enhancers	Pancreas	Pancrea
21	chr10:97274400-97280400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:97274600-97277800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr10:97275000-97277800	Enhancers	Lung	lung
24	chr10:97275200-97279800	Enhancers	Brain Anterior Caudate	brain
25	chr10:97275600-97279400	Enhancers	Aorta	Aorta
26	chr10:97275800-97277800	Weak transcription	Brain Angular Gyrus	brain
27	chr10:97275800-97278600	Weak transcription	Spleen	Spleen
28	chr10:97275800-97279800	Enhancers	HepG2	liver
29	chr10:97276000-97278200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr10:97276200-97278000	Enhancers	Brain Substantia Nigra	brain
31	chr10:97276200-97279400	Enhancers	K562	blood
32	chr10:97276400-97279200	Enhancers	HSMMtube	muscle
33	chr10:97276400-97279600	Enhancers	Liver	Liver
34	chr10:97276600-97278000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:97276600-97279200	Enhancers	Gastric	stomach
36	chr10:97276600-97279600	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr10:97276600-97279800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:97276600-97283400	Enhancers	Fetal Brain Male	brain
39	chr10:97276800-97278800	Enhancers	Fetal Intestine Small	intestine
40	chr10:97276800-97280000	Enhancers	Fetal Stomach	stomach
41	chr10:97277000-97278000	Enhancers	Esophagus	oesophagus
42	chr10:97277000-97278800	Enhancers	Brain Hippocampus Middle	brain
43	chr10:97277000-97279000	Enhancers	Psoas Muscle	Psoas
44	chr10:97277000-97279000	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr10:97277000-97279200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:97277000-97279200	Enhancers	Brain Germinal Matrix	brain
47	chr10:97277000-97279200	Enhancers	Fetal Intestine Large	intestine
48	chr10:97277000-97284200	Enhancers	Fetal Brain Female	brain
49	chr10:97277200-97278000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:97277200-97278000	Enhancers	Ovary	ovary

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