Variant report

Variant	rs7897540
Chromosome Location	chr10:97289236-97289237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97280950..97286355-chr10:97287261..97290251,5	K562	blood:
2	chr10:97288240..97291346-chr10:97319603..97322550,3	K562	blood:
3	chr10:97262883..97265174-chr10:97289179..97291481,2	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10882609	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882610	0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs11188343	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1326934	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1952232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4146489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4146490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4244316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4917695	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6584007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918060	0.81[ASN][1000 genomes]
rs943338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97278000-97294000	Weak transcription	Esophagus	oesophagus
2	chr10:97279200-97290400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:97279200-97290400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:97279200-97293200	Weak transcription	Fetal Lung	lung
5	chr10:97279800-97290600	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:97280600-97291000	Enhancers	Colon Smooth Muscle	Colon
7	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
8	chr10:97281600-97289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:97281600-97296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:97281800-97295000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
12	chr10:97282400-97292000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:97282400-97292000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:97283000-97292000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:97283200-97296400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:97284200-97289600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:97285000-97289400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:97285000-97289600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:97285000-97290000	Weak transcription	Brain Substantia Nigra	brain
20	chr10:97285200-97292400	Enhancers	Fetal Intestine Large	intestine
21	chr10:97286000-97290800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:97286200-97289400	Weak transcription	Pancreas	Pancrea
23	chr10:97286200-97289800	Weak transcription	Gastric	stomach
24	chr10:97286200-97290400	Weak transcription	Spleen	Spleen
25	chr10:97286200-97294800	Weak transcription	Small Intestine	intestine
26	chr10:97286200-97296000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:97286800-97293200	Weak transcription	Liver	Liver
28	chr10:97287800-97292800	Enhancers	Brain Cingulate Gyrus	brain
29	chr10:97288200-97290400	Weak transcription	Aorta	Aorta
30	chr10:97288200-97291000	Enhancers	HepG2	liver
31	chr10:97288400-97289400	Weak transcription	Psoas Muscle	Psoas
32	chr10:97288600-97289400	Enhancers	HSMM	muscle
33	chr10:97288600-97289400	Enhancers	HSMMtube	muscle
34	chr10:97288600-97289800	Enhancers	Fetal Intestine Small	intestine
35	chr10:97288600-97291800	Weak transcription	Placenta	Placenta
36	chr10:97288800-97289400	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr10:97288800-97289400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:97288800-97289400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr10:97288800-97289400	Enhancers	HUVEC	blood vessel
40	chr10:97288800-97289400	Enhancers	NH-A	brain
41	chr10:97288800-97289600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:97288800-97289600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:97288800-97289800	Enhancers	Adipose Nuclei	Adipose
44	chr10:97288800-97292400	Enhancers	Brain Anterior Caudate	brain
45	chr10:97288800-97292800	Enhancers	Right Atrium	heart
46	chr10:97288800-97293600	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr10:97288800-97294400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:97289000-97289400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:97289000-97289400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr10:97289000-97289800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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