Variant report

Variant	rs1326934
Chromosome Location	chr10:97284081-97284082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97280950..97286355-chr10:97287261..97290251,5	K562	blood:
2	chr10:97282540..97285200-chr10:97291326..97293754,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10882609	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882610	0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs11188343	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12776800	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1952232	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4146489	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4146490	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4146491	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4146492	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4244316	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4917695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6584004	0.83[GIH][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs6584007	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7897540	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7918060	0.85[ASN][1000 genomes]
rs943338	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Diabetic nephropathy in type 1 diabetes	25476525	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1326934	CRTAC1	cis	cerebellum	SCAN

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97271600-97284600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:97277000-97284200	Enhancers	Fetal Brain Female	brain
3	chr10:97278000-97294000	Weak transcription	Esophagus	oesophagus
4	chr10:97279200-97285800	Weak transcription	Pancreas	Pancrea
5	chr10:97279200-97290400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:97279200-97290400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:97279200-97293200	Weak transcription	Fetal Lung	lung
8	chr10:97279400-97285800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:97279600-97284800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:97279800-97284600	Weak transcription	Brain Substantia Nigra	brain
11	chr10:97279800-97288200	Weak transcription	HepG2	liver
12	chr10:97279800-97290600	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:97280000-97284200	Weak transcription	Fetal Stomach	stomach
14	chr10:97280400-97289000	Enhancers	Rectal Smooth Muscle	rectum
15	chr10:97280600-97291000	Enhancers	Colon Smooth Muscle	Colon
16	chr10:97280800-97285000	Enhancers	Right Atrium	heart
17	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
18	chr10:97281000-97285600	Weak transcription	Fetal Intestine Small	intestine
19	chr10:97281200-97284600	Weak transcription	Right Ventricle	heart
20	chr10:97281600-97284200	Weak transcription	Lung	lung
21	chr10:97281600-97285800	Weak transcription	Gastric	stomach
22	chr10:97281600-97289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:97281600-97296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:97281800-97295000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr10:97282200-97285200	Enhancers	Brain Angular Gyrus	brain
26	chr10:97282200-97285400	Enhancers	Brain Cingulate Gyrus	brain
27	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
28	chr10:97282400-97288800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:97282400-97292000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:97282400-97292000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:97282600-97284400	Enhancers	Stomach Smooth Muscle	stomach
32	chr10:97282600-97286600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:97282800-97285800	Weak transcription	Aorta	Aorta
34	chr10:97282800-97287400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr10:97282800-97288800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:97283000-97292000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr10:97283200-97284200	Weak transcription	HSMMtube	muscle
38	chr10:97283200-97296400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:97283400-97284200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:97283400-97286000	Weak transcription	Fetal Brain Male	brain
41	chr10:97283400-97287000	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr10:97283600-97284400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:97283600-97284800	Weak transcription	Brain Hippocampus Middle	brain
44	chr10:97283600-97284800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:97283600-97286000	Weak transcription	Stomach Mucosa	stomach
46	chr10:97283800-97284400	Enhancers	K562	blood
47	chr10:97283800-97284600	Weak transcription	Brain Anterior Caudate	brain
48	chr10:97283800-97284800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:97284000-97284200	Enhancers	Liver	Liver
50	chr10:97284000-97284400	Enhancers	Psoas Muscle	Psoas

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