Variant report

Variant	rs11188344
Chromosome Location	chr10:97288957-97288958
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97280950..97286355-chr10:97287261..97290251,5	K562	blood:
2	chr10:97288240..97291346-chr10:97319603..97322550,3	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10882606	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882608	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882610	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10882611	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188338	0.85[ASN][1000 genomes]
rs11188346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188347	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188348	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188349	0.91[ASN][1000 genomes]
rs11188358	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12254959	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12776562	0.86[ASN][1000 genomes]
rs12776800	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1326932	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1359722	0.95[ASN][1000 genomes]
rs1819288	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1887226	0.88[EUR][1000 genomes]
rs35764302	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4572071	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7918060	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7922126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97278000-97294000	Weak transcription	Esophagus	oesophagus
2	chr10:97279200-97290400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:97279200-97290400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:97279200-97293200	Weak transcription	Fetal Lung	lung
5	chr10:97279800-97290600	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:97280400-97289000	Enhancers	Rectal Smooth Muscle	rectum
7	chr10:97280600-97291000	Enhancers	Colon Smooth Muscle	Colon
8	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
9	chr10:97281600-97289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:97281600-97296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:97281800-97295000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
13	chr10:97282400-97292000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:97282400-97292000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:97283000-97292000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr10:97283200-97296400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:97284200-97289000	Weak transcription	Fetal Brain Female	brain
18	chr10:97284200-97289600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:97284600-97289200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:97285000-97289200	Weak transcription	Lung	lung
21	chr10:97285000-97289400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:97285000-97289600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:97285000-97290000	Weak transcription	Brain Substantia Nigra	brain
24	chr10:97285200-97289000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:97285200-97289200	Weak transcription	Brain Angular Gyrus	brain
26	chr10:97285200-97292400	Enhancers	Fetal Intestine Large	intestine
27	chr10:97286000-97289200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:97286000-97290800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:97286200-97289200	Weak transcription	Brain Hippocampus Middle	brain
30	chr10:97286200-97289400	Weak transcription	Pancreas	Pancrea
31	chr10:97286200-97289800	Weak transcription	Gastric	stomach
32	chr10:97286200-97290400	Weak transcription	Spleen	Spleen
33	chr10:97286200-97294800	Weak transcription	Small Intestine	intestine
34	chr10:97286200-97296000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr10:97286400-97289000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr10:97286400-97289000	Weak transcription	Right Ventricle	heart
37	chr10:97286400-97289200	Weak transcription	Stomach Mucosa	stomach
38	chr10:97286600-97289000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:97286800-97289000	Weak transcription	Fetal Stomach	stomach
40	chr10:97286800-97293200	Weak transcription	Liver	Liver
41	chr10:97287600-97289200	Enhancers	Stomach Smooth Muscle	stomach
42	chr10:97287800-97292800	Enhancers	Brain Cingulate Gyrus	brain
43	chr10:97288200-97289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr10:97288200-97289200	Weak transcription	Left Ventricle	heart
45	chr10:97288200-97290400	Weak transcription	Aorta	Aorta
46	chr10:97288200-97291000	Enhancers	HepG2	liver
47	chr10:97288400-97289400	Weak transcription	Psoas Muscle	Psoas
48	chr10:97288600-97289200	Flanking Active TSS	K562	blood
49	chr10:97288600-97289400	Enhancers	HSMM	muscle
50	chr10:97288600-97289400	Enhancers	HSMMtube	muscle

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