Variant report

Variant	rs7922126
Chromosome Location	chr10:97292507-97292508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97292035..97293722-chr10:97302086..97303727,2	K562	blood:
2	chr10:97290965..97293136-chr10:97317143..97318856,2	K562	blood:
3	chr10:97272650..97274953-chr10:97291349..97294026,2	K562	blood:
4	chr10:97290800..97293543-chr10:97293667..97298455,5	K562	blood:
5	chr10:97282540..97285200-chr10:97291326..97293754,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10882606	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882608	0.83[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882610	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10882611	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188338	0.86[ASN][1000 genomes]
rs11188344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188346	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188347	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188348	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188349	0.91[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs11188358	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12254959	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12776562	0.83[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs12776800	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1326932	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1359722	0.96[ASN][1000 genomes]
rs1819288	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1887226	0.87[EUR][1000 genomes]
rs35764302	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4572071	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7918060	0.88[CEU][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97278000-97294000	Weak transcription	Esophagus	oesophagus
2	chr10:97279200-97293200	Weak transcription	Fetal Lung	lung
3	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
4	chr10:97281600-97296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:97281800-97295000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
7	chr10:97283200-97296400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:97286200-97294800	Weak transcription	Small Intestine	intestine
9	chr10:97286200-97296000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:97286800-97293200	Weak transcription	Liver	Liver
11	chr10:97287800-97292800	Enhancers	Brain Cingulate Gyrus	brain
12	chr10:97288800-97292800	Enhancers	Right Atrium	heart
13	chr10:97288800-97293600	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr10:97288800-97294400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:97289000-97294800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:97289000-97295000	Enhancers	Right Ventricle	heart
17	chr10:97289200-97292600	Enhancers	Lung	lung
18	chr10:97289200-97299200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr10:97289200-97309000	Enhancers	Left Ventricle	heart
20	chr10:97289400-97296200	Weak transcription	HSMMtube	muscle
21	chr10:97289400-97303800	Weak transcription	HSMM	muscle
22	chr10:97289800-97292600	Genic enhancers	Fetal Intestine Small	intestine
23	chr10:97289800-97293800	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr10:97290000-97292800	Enhancers	Brain Substantia Nigra	brain
25	chr10:97290000-97298600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr10:97290000-97301400	Enhancers	Rectal Smooth Muscle	rectum
27	chr10:97290400-97293000	Enhancers	Spleen	Spleen
28	chr10:97290400-97294200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr10:97290400-97298800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:97290600-97294200	Enhancers	Fetal Muscle Leg	muscle
31	chr10:97290600-97301800	Weak transcription	Ovary	ovary
32	chr10:97290800-97293800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:97291000-97293200	Weak transcription	Psoas Muscle	Psoas
34	chr10:97291000-97293400	Genic enhancers	HepG2	liver
35	chr10:97291000-97295600	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:97291200-97297200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr10:97291200-97301000	Weak transcription	Fetal Brain Female	brain
38	chr10:97291400-97293600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr10:97291600-97293000	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr10:97291600-97295000	Enhancers	Gastric	stomach
41	chr10:97291800-97292600	Enhancers	HUVEC	blood vessel
42	chr10:97291800-97296600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:97291800-97308600	Enhancers	Colon Smooth Muscle	Colon
44	chr10:97292000-97292600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr10:97292000-97292600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr10:97292000-97292800	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr10:97292000-97293000	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr10:97292000-97293200	Weak transcription	Adipose Nuclei	Adipose
49	chr10:97292000-97293800	Enhancers	Primary hematopoietic stem cells	blood
50	chr10:97292000-97293800	Enhancers	Brain Angular Gyrus	brain

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