Variant report

Variant	rs10882904
Chromosome Location	chr10:99115683-99115684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99093680..99095847-chr10:99114735..99116440,2	MCF-7	breast:
2	chr10:99115036..99117967-chr10:99132935..99135217,2	K562	blood:
3	chr10:99091407..99096076-chr10:99110583..99117776,8	MCF-7	breast:
4	chr10:99089670..99092667-chr10:99113757..99116464,3	MCF-7	breast:
5	chr10:99092017..99094354-chr10:99114011..99116551,2	K562	blood:
6	chr10:99113531..99116143-chr10:99121714..99124920,3	MCF-7	breast:
7	chr10:99114802..99116832-chr10:99128580..99131227,2	K562	blood:
8	chr10:99109959..99112928-chr10:99114627..99116420,2	K562	blood:
9	chr10:99037940..99038860-chr10:99115149..99115993,4	MCF-7	breast:
10	chr10:98993826..98994564-chr10:99114704..99115929,4	MCF-7	breast:
11	chr10:99115003..99117234-chr10:99118268..99120611,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000225850	Chromatin interaction
ENSG00000181274	Chromatin interaction
ENSG00000052749	Chromatin interaction

Extended variants
information (count: 149 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs10444013	0.81[EUR][1000 genomes]
rs10444014	0.84[EUR][1000 genomes]
rs10444016	0.82[EUR][1000 genomes]
rs1048442	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1048445	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10786336	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10786337	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10786338	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10786339	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10786340	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10786341	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10786342	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10786343	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10786344	0.87[CEU][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes]
rs10786345	0.80[EUR][1000 genomes]
rs10786346	0.84[EUR][1000 genomes]
rs10786347	0.83[ASN][1000 genomes]
rs10882888	1.00[CHB][hapmap]
rs10882900	0.94[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882903	0.95[CEU][hapmap];0.85[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882907	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882908	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882909	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882910	0.91[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882911	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882912	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882913	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882914	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882915	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882916	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882917	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882922	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882924	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882926	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882929	0.82[ASN][1000 genomes]
rs10882930	0.82[ASN][1000 genomes]
rs10882931	0.84[EUR][1000 genomes]
rs10882934	0.82[EUR][1000 genomes]
rs11189144	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189154	0.88[ASN][1000 genomes]
rs11189156	0.97[ASN][1000 genomes]
rs11189157	0.85[CEU][hapmap];0.98[ASN][1000 genomes]
rs11189159	0.93[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs11189163	0.98[ASN][1000 genomes]
rs11189165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11189167	0.98[ASN][1000 genomes]
rs11189168	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11189172	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189173	0.88[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs11189174	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189175	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189177	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189178	0.90[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189179	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189180	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189181	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189182	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189183	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189191	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11189192	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11189193	0.87[ASN][1000 genomes]
rs11189195	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11189196	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11189197	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11189200	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11189204	0.84[EUR][1000 genomes]
rs11189206	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs11189208	0.83[ASN][1000 genomes]
rs11812223	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11814021	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11817852	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11817875	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12218483	0.93[ASN][1000 genomes]
rs12258560	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12266723	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12359257	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12412478	0.93[ASN][1000 genomes]
rs12415424	0.93[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs1537645	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1537646	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1547328	0.97[ASN][1000 genomes]
rs17112674	1.00[CEU][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17112676	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17504745	0.97[ASN][1000 genomes]
rs1810983	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2275089	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2275090	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2275581	0.86[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2275582	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2297667	0.91[CEU][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2297668	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2297988	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2861878	0.97[ASN][1000 genomes]
rs3737194	1.00[CEU][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3814553	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3818787	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3818908	0.91[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4268448	0.97[ASN][1000 genomes]
rs4635018	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60237341	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61861861	0.93[ASN][1000 genomes]
rs61861870	0.88[ASN][1000 genomes]
rs61861912	0.81[EUR][1000 genomes]
rs61863813	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61863815	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61863816	0.97[ASN][1000 genomes]
rs61863819	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584126	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584127	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584128	0.87[CEU][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes]
rs7074511	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7074678	0.88[CHB][hapmap]
rs7078004	0.91[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7078782	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs7084654	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7088410	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7092350	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7092499	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7096801	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72838764	0.93[ASN][1000 genomes]
rs7895695	0.94[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];0.84[JPT][hapmap];0.85[TSI][hapmap];0.83[ASN][1000 genomes]
rs7896100	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7903562	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7903847	0.81[ASN][1000 genomes]
rs7905026	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7909345	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7917752	0.97[ASN][1000 genomes]
rs7918742	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7918948	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7921585	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7922512	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7923385	0.95[CEU][hapmap];0.85[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7924254	0.97[ASN][1000 genomes]
rs869967	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs954149	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9787426	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9787454	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9887991	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9887994	0.87[ASN][1000 genomes]
rs9888026	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9888116	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9888117	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045553	chr10:98944397-99122203	Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv540750	chr10:98944397-99122203	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv895914	chr10:99006083-99131676	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv467437	chr10:99115683-99167436	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv552023	chr10:99115683-99167436	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs10882904	RRP12	cis	cerebellum	SCAN
rs10882904	RRP12	cis	Whole Blood	GTEx
rs10882904	RRP12	cis	Heart Left Ventricle	GTEx
rs10882904	RRP12	cis	parietal	SCAN
rs10882904	RRP12	cis	lymphoblastoid	seeQTL
rs10882904	RP11-452K12.7	cis	Whole Blood	GTEx
rs10882904	MMS19	cis	cerebellum	SCAN
rs10882904	RRP12	cis	Muscle Skeletal	GTEx

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99097400-99116000	Weak transcription	Hela-S3	cervix
2	chr10:99097600-99115800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:99098200-99116200	Weak transcription	Brain Angular Gyrus	brain
4	chr10:99103000-99116000	Weak transcription	Brain Germinal Matrix	brain
5	chr10:99106800-99116400	Weak transcription	Aorta	Aorta
6	chr10:99107000-99131800	Weak transcription	Fetal Kidney	kidney
7	chr10:99107200-99116000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:99107200-99129200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:99107400-99116000	Weak transcription	Primary T cells from cord blood	blood
10	chr10:99107600-99116000	Weak transcription	Fetal Thymus	thymus
11	chr10:99107800-99117600	Weak transcription	Fetal Lung	lung
12	chr10:99108200-99116000	Weak transcription	Esophagus	oesophagus
13	chr10:99108400-99115800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr10:99109000-99157800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:99109400-99118400	Weak transcription	HMEC	breast
16	chr10:99109400-99120400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:99109600-99116000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr10:99109600-99120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:99109600-99157800	Strong transcription	Fetal Stomach	stomach
20	chr10:99109800-99115800	Weak transcription	Colon Smooth Muscle	Colon
21	chr10:99109800-99116000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:99109800-99116400	Weak transcription	Small Intestine	intestine
23	chr10:99109800-99118400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:99109800-99118400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr10:99110200-99118600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:99110400-99118400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:99110600-99115800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr10:99110600-99132800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr10:99110800-99139800	Weak transcription	Stomach Mucosa	stomach
30	chr10:99111200-99121600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:99111600-99115800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:99111600-99141800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:99112200-99115800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr10:99112200-99116200	Weak transcription	HSMM	muscle
35	chr10:99113000-99116000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:99113200-99115800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr10:99113200-99135400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:99113400-99158600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:99113800-99116600	Weak transcription	Thymus	Thymus
40	chr10:99113800-99138800	Strong transcription	Fetal Intestine Small	intestine
41	chr10:99113800-99158800	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr10:99113800-99159800	Weak transcription	Fetal Brain Male	brain
43	chr10:99114000-99115800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:99114000-99118200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:99114200-99116000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr10:99114200-99116200	Weak transcription	NHDF-Ad	bronchial
47	chr10:99114400-99135000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:99114600-99117400	Strong transcription	Osteobl	bone
49	chr10:99114600-99159000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr10:99114800-99117200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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