Variant report

Variant	rs10882926
Chromosome Location	chr10:99160690-99160691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:140)
CpG islands
(count:61)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:140 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr10:99159827-99161304	K562	blood:	n/a	n/a
2	CREB1	chr10:99160663-99161384	ECC-1	luminal epithelium:	n/a	n/a
3	MAX	chr10:99160509-99161349	HepG2	liver:	n/a	n/a
4	POLR2A	chr10:99159813-99161341	MCF10A-Er-Src	breast:	n/a	n/a
5	MTA3	chr10:99160682-99161563	GM12878	blood:	n/a	n/a
6	MAX	chr10:99160654-99161340	SK-N-SH	brain:	n/a	n/a
7	MAX	chr10:99160648-99161403	MCF-7	breast:	n/a	n/a
8	TAF1	chr10:99160576-99161354	ECC-1	luminal epithelium:	n/a	n/a
9	MAX	chr10:99160620-99161390	A549	lung:	n/a	n/a
10	SIN3A	chr10:99160554-99161283	GM12878	blood:	n/a	n/a
11	FOXA2	chr10:99160602-99161489	A549	lung:	n/a	n/a
12	PML	chr10:99160602-99161416	GM12878	blood:	n/a	n/a
13	E2F6	chr10:99160649-99161405	A549	lung:	n/a	chr10:99160812-99160821 chr10:99160754-99160764
14	POLR2A	chr10:99159865-99161430	PBDE	blood:	n/a	n/a
15	MXI1	chr10:99159794-99161342	Hela-S3	cervix:	n/a	n/a
16	POLR2A	chr10:99159892-99161377	K562	blood:	n/a	n/a
17	GABPA	chr10:99160637-99161390	MCF-7	breast:	n/a	chr10:99160812-99160821
18	CUX1	chr10:99160648-99161181	GM12878	blood:	n/a	n/a
19	MYC	chr10:99160372-99161328	MCF10A-Er-Src	breast:	n/a	n/a
20	POLR2A	chr10:99159821-99161373	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr10:99159630-99161517	Hela-S3	cervix:	n/a	n/a
22	USF2	chr10:99160588-99161238	H1-hESC	embryonic stem cell:	n/a	chr10:99160813-99160829
23	SIN3AK20	chr10:99160538-99161340	A549	lung:	n/a	n/a
24	HCFC1	chr10:99160538-99161569	Hela-S3	cervix:	n/a	n/a
25	MXI1	chr10:99160647-99161385	H1-hESC	embryonic stem cell:	n/a	n/a
26	ELF1	chr10:99160678-99161342	GM12878	blood:	n/a	chr10:99160817-99160829 chr10:99161081-99161094
27	EGR1	chr10:99160635-99161215	K562	blood:	n/a	n/a
28	ETS1	chr10:99160650-99161374	A549	lung:	n/a	chr10:99160812-99160823 chr10:99161139-99161155 chr10:99161209-99161216
29	CTCF	chr10:99160680-99160830	K562	blood:	n/a	chr10:99160814-99160827
30	SIN3AK20	chr10:99160597-99161273	HepG2	liver:	n/a	n/a
31	TCF12	chr10:99160626-99161451	A549	lung:	n/a	n/a
32	POLR2A	chr10:99160672-99161380	GM12878	blood:	n/a	n/a
33	CREB1	chr10:99160480-99161360	HepG2	liver:	n/a	n/a
34	REST	chr10:99160568-99161346	A549	lung:	n/a	n/a
35	CREB1	chr10:99160645-99161446	K562	blood:	n/a	n/a
36	MAX	chr10:99159804-99161355	HepG2	liver:	n/a	n/a
37	POLR2A	chr10:99159872-99161364	HL-60	blood:	n/a	n/a
38	YY1	chr10:99160649-99161135	K562	blood:	n/a	chr10:99160812-99160821
39	MAX	chr10:99160491-99161504	HCT-116	colon:	n/a	n/a
40	MXI1	chr10:99159941-99161395	GM12878	blood:	n/a	n/a
41	MXI1	chr10:99160623-99161330	K562	blood:	n/a	n/a
42	ETS1	chr10:99160632-99161191	K562	blood:	n/a	chr10:99160812-99160823 chr10:99161139-99161155
43	MYC	chr10:99160544-99161392	A549	lung:	n/a	n/a
44	CTCF	chr10:99160580-99160730	GM12873	blood:	n/a	n/a
45	POLR2A	chr10:99159884-99161326	HUVEC	blood vessel:	n/a	n/a
46	YY1	chr10:99160620-99161125	HepG2	liver:	n/a	chr10:99160812-99160821
47	MAX	chr10:99159793-99161351	NB4	blood:	n/a	n/a
48	SIN3AK20	chr10:99160392-99161280	PANC-1	pancreas:	n/a	n/a
49	POLR2A	chr10:99160688-99161413	HUVEC	blood vessel:	n/a	n/a
50	GABPA	chr10:99160500-99161449	SK-N-SH	brain:	n/a	chr10:99160812-99160821

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:99160663-99160713	HIPEpiC	eye:	n/a
2	chr10:99160663-99160713	Jurkat	blood:	n/a
3	chr10:99160663-99160713	HNPCEpiC	eye:	n/a
4	chr10:99160663-99160713	U87	brain:	n/a
5	chr10:99160663-99160713	H1-hESC	embryonic stem cell:	embryo
6	chr10:99160663-99160713	HEEpiC	esophagus:	n/a
7	chr10:99160663-99160713	LNCaP	prostate:	n/a
8	chr10:99160663-99160713	Caco-2	colon:	n/a
9	chr10:99160663-99160713	SAEC	small airway:	n/a
10	chr10:99160663-99160713	NHDF-neo	bronchial:	n/a
11	chr10:99160663-99160713	IMR90	lung:	fetal
12	chr10:99160663-99160713	HEK293	kidney:	embryo
13	chr10:99160663-99160713	GM19239	blood:	n/a
14	chr10:99160663-99160713	NHBE	bronchial:	n/a
15	chr10:99160663-99160713	CMK	blood:	n/a
16	chr10:99160663-99160713	HL-60	blood:	n/a
17	chr10:99160663-99160713	MCF10A-Er-Src	breast:	n/a
18	chr10:99160663-99160713	NH-A	brain:	n/a
19	chr10:99160663-99160713	AG04450	lung:	fetal
20	chr10:99160663-99160713	GM12878	blood:	n/a
21	chr10:99160663-99160713	ECC-1	luminal epithelium:	n/a
22	chr10:99160663-99160713	HMEC	breast:	n/a
23	chr10:99160663-99160713	AG09309	skin:	n/a
24	chr10:99160663-99160713	HRE	kidney:	n/a
25	chr10:99160663-99160713	HPAEpiC	pulmonary alveolar:	n/a
26	chr10:99160663-99160713	HUVEC	blood vessel:	n/a
27	chr10:99160663-99160713	HRPEpiC	eye:	n/a
28	chr10:99160663-99160713	Hepatocyte	liver:	n/a
29	chr10:99160663-99160713	AG04449	skin:	fetal
30	chr10:99160663-99160713	HCT-116	colon:	n/a
31	chr10:99160663-99160713	NB4	blood:	n/a
32	chr10:99160663-99160713	GM12891	blood:	n/a
33	chr10:99160663-99160713	SK-N-SH	brain:	n/a
34	chr10:99160663-99160713	BE2_C	brain:	n/a
35	chr10:99160663-99160713	K562	blood:	n/a
36	chr10:99160663-99160713	HRCEpiC	kidney:	n/a
37	chr10:99160663-99160713	RPTEC	kidney:	n/a
38	chr10:99160663-99160713	PrEC	prostate:	n/a
39	chr10:99160663-99160713	SKMC	muscle:	n/a
40	chr10:99160663-99160713	MCF-7	breast:	n/a
41	chr10:99160663-99160713	AG09319	gingival:	n/a
42	chr10:99160663-99160713	HCPEpiC	choroid plexus:	n/a
43	chr10:99160663-99160713	SK-N-MC	brain:	n/a
44	chr10:99160663-99160713	GM12892	blood:	n/a
45	chr10:99160663-99160713	ovcar-3	ovarian:	n/a
46	chr10:99160663-99160713	GM06990	blood:	n/a
47	chr10:99160663-99160713	PANC-1	pancreas:	n/a
48	chr10:99160663-99160713	HepG2	liver:	n/a
49	chr10:99160663-99160713	AG10803	skin:	n/a
50	chr10:99160663-99160713	T-47D	breast:	n/a

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99160516..99161073-chr19:50083420..50084338,2	Hela-S3	cervix:
2	chr10:99159358..99162440-chr10:99256931..99260180,3	MCF-7	breast:
3	chr10:99158229..99164055-chr10:99184399..99190088,9	MCF-7	breast:
4	chr1:234509008..234509787-chr10:99160551..99161137,2	Hela-S3	cervix:
5	chr10:99159690..99162699-chr10:99184060..99186818,5	K562	blood:
6	chr10:99158767..99161294-chr10:99204142..99206207,3	K562	blood:
7	chr10:99160174..99161140-chr14:23564728..23565338,2	Hela-S3	cervix:
8	chr10:99158733..99161055-chr10:99257726..99260280,2	MCF-7	breast:
9	chr10:99158602..99162553-chr10:99184335..99188453,6	MCF-7	breast:
10	chr10:99158578..99161453-chr10:99205742..99208123,2	MCF-7	breast:
11	chr10:99159614..99162570-chr10:99184923..99189339,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000231970	TF binding region
ENSG00000231970	CpG island
ENSG00000126460	Chromatin interaction
ENSG00000231663	Chromatin interaction
ENSG00000155229	Chromatin interaction
ENSG00000165886	Chromatin interaction
ENSG00000179933	Chromatin interaction
ENSG00000224474	Chromatin interaction
ENSG00000171314	Chromatin interaction
ENSG00000171311	Chromatin interaction
ENSG00000171307	Chromatin interaction
ENSG00000100813	Chromatin interaction
ENSG00000142546	Chromatin interaction
ENSG00000168275	Chromatin interaction

Extended variants
information (count: 150 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs10444013	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10444014	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10444016	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1048442	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048445	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10786336	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10786337	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786338	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786339	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786340	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786341	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786342	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786343	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10786344	0.95[CEU][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10786345	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10786346	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10786347	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10882888	0.93[CHB][hapmap]
rs10882900	0.88[CHB][hapmap];0.80[ASN][1000 genomes]
rs10882903	0.87[CEU][hapmap];0.80[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10882904	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882907	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882908	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882909	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882910	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882911	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882912	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882914	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882915	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882916	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882917	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882922	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882924	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882929	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10882930	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10882931	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10882934	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11189144	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11189156	0.87[ASN][1000 genomes]
rs11189157	0.88[ASN][1000 genomes]
rs11189159	0.86[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs11189163	0.88[ASN][1000 genomes]
rs11189165	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11189167	0.88[ASN][1000 genomes]
rs11189168	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11189172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189173	0.86[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs11189174	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189175	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189177	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189178	0.95[CEU][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189179	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189180	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189181	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189182	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189183	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189191	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11189192	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11189193	0.97[ASN][1000 genomes]
rs11189195	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11189196	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11189197	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11189200	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11189203	0.81[AFR][1000 genomes]
rs11189204	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11189206	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11189208	0.80[CEU][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11812223	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11814021	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11817852	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11817875	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12218483	0.93[ASN][1000 genomes]
rs12258560	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12266723	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12359257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12412478	0.93[ASN][1000 genomes]
rs12415424	0.85[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs1537645	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1537646	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1547328	0.87[ASN][1000 genomes]
rs17112674	0.91[CEU][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.80[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs17112676	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17504745	0.87[ASN][1000 genomes]
rs1810983	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2275089	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2275090	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2275581	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs2275582	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2297667	1.00[CEU][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2297668	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297988	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2861878	0.87[ASN][1000 genomes]
rs3737194	0.91[CEU][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs3814553	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3818787	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3818908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4268448	0.87[ASN][1000 genomes]
rs4635018	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60237341	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61861861	0.93[ASN][1000 genomes]
rs61861870	0.98[ASN][1000 genomes]
rs61861912	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61863813	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61863815	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61863816	0.89[ASN][1000 genomes]
rs61863819	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584126	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584127	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584128	0.95[CEU][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7074511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7074678	0.82[CHB][hapmap]
rs7078004	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7078782	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7084654	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7088410	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7092350	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7092499	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7096801	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72838764	0.93[ASN][1000 genomes]
rs7895695	0.86[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7896100	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7900255	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7903562	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7903847	0.91[ASN][1000 genomes]
rs7905026	0.88[ASN][1000 genomes]
rs7909345	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7916665	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7917752	0.87[ASN][1000 genomes]
rs7918742	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7918948	0.93[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs7921585	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7922512	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7923385	0.87[CEU][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes]
rs7924254	0.88[ASN][1000 genomes]
rs869967	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs954149	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9787426	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9787454	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9887991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9887994	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9888026	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9888116	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9888117	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467437	chr10:99115683-99167436	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv552023	chr10:99115683-99167436	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467438	chr10:99126249-99173870	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv552024	chr10:99126249-99173870	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv467440	chr10:99134784-99204791	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv552025	chr10:99134784-99204791	Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs10882926	RRP12	cis	Heart Left Ventricle	GTEx
rs10882926	RRP12	cis	cerebellum	SCAN
rs10882926	RRP12	cis	Muscle Skeletal	GTEx
rs10882926	FRAT2	cis	multi-tissue	Pritchard
rs10882926	RRP12	cis	lymphoblastoid	seeQTL
rs10882926	RRP12	cis	parietal	SCAN
rs10882926	KIAA0690	cis	multi-tissue	Pritchard
rs10882926	MMS19	cis	cerebellum	SCAN
rs10882926	RP11-452K12.7	cis	Whole Blood	GTEx
rs10882926	FRAT1	cis	multi-tissue	Pritchard

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99159400-99161200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:99159400-99161600	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr10:99159600-99160800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:99159600-99161200	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr10:99159600-99161200	Active TSS	K562	blood
6	chr10:99159600-99161400	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr10:99159600-99161400	Active TSS	Psoas Muscle	Psoas
8	chr10:99159600-99161400	Active TSS	HSMMtube	muscle
9	chr10:99159600-99161800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr10:99159800-99160800	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr10:99159800-99160800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr10:99159800-99160800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:99159800-99160800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:99159800-99160800	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr10:99159800-99160800	Flanking Active TSS	Liver	Liver
16	chr10:99159800-99160800	Flanking Active TSS	Brain Germinal Matrix	brain
17	chr10:99159800-99160800	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr10:99159800-99160800	Flanking Active TSS	Fetal Stomach	stomach
19	chr10:99159800-99160800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
20	chr10:99159800-99160800	Flanking Active TSS	Rectal Smooth Muscle	rectum
21	chr10:99159800-99160800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr10:99159800-99161000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr10:99159800-99161000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:99159800-99161000	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr10:99159800-99161200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:99159800-99161200	Active TSS	NHEK	skin
27	chr10:99159800-99161400	Active TSS	HSMM	muscle
28	chr10:99159800-99161600	Active TSS	Colonic Mucosa	Colon
29	chr10:99159800-99161600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr10:99160000-99160800	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr10:99160000-99160800	Flanking Active TSS	Primary B cells from peripheral blood	blood
32	chr10:99160000-99160800	Flanking Active TSS	Brain Angular Gyrus	brain
33	chr10:99160000-99160800	Flanking Active TSS	Fetal Brain Female	brain
34	chr10:99160000-99160800	Flanking Active TSS	Fetal Muscle Leg	muscle
35	chr10:99160000-99160800	Flanking Active TSS	Placenta	Placenta
36	chr10:99160000-99160800	Flanking Active TSS	Thymus	Thymus
37	chr10:99160000-99161000	Active TSS	Small Intestine	intestine
38	chr10:99160000-99161200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:99160000-99161200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
40	chr10:99160000-99161200	Active TSS	Gastric	stomach
41	chr10:99160000-99161400	Active TSS	ES-I3 Cell Line	embryonic stem cell
42	chr10:99160000-99161400	Active TSS	H9 Cell Line	embryonic stem cell
43	chr10:99160000-99161400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:99160000-99161400	Active TSS	iPS-15b Cell Line	embryonic stem cell
45	chr10:99160000-99161400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
46	chr10:99160000-99161400	Flanking Active TSS	Fetal Thymus	thymus
47	chr10:99160000-99161400	Bivalent/Poised TSS	HepG2	liver
48	chr10:99160200-99160800	Flanking Active TSS	Primary T cells from cord blood	blood
49	chr10:99160200-99160800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
50	chr10:99160200-99160800	Flanking Active TSS	Placenta Amnion	Placenta Amnion

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Variant report

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