Variant report

Variant	rs9888117
Chromosome Location	chr10:99159963-99159964
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:118)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:118 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF3	chr10:99159885-99160073	K562	blood:	n/a	chr10:99159942-99159956
2	TBP	chr10:99159827-99161304	K562	blood:	n/a	n/a
3	ZBTB7A	chr10:99159940-99160329	K562	blood:	n/a	n/a
4	JUND	chr10:99159754-99160274	K562	blood:	n/a	chr10:99160008-99160015
5	MAX	chr10:99159860-99160421	K562	blood:	n/a	n/a
6	POLR2A	chr10:99159813-99161341	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr10:99159763-99160142	MCF10A-Er-Src	breast:	n/a	chr10:99160008-99160015
8	CEBPB	chr10:99159626-99160397	K562	blood:	n/a	chr10:99159837-99159849
9	ZMIZ1	chr10:99159861-99160280	K562	blood:	n/a	n/a
10	FOSL2	chr10:99159716-99160212	SK-N-SH	brain:	n/a	chr10:99160008-99160015
11	YY1	chr10:99159874-99160046	K562	blood:	n/a	n/a
12	MYC	chr10:99159927-99160306	K562	blood:	n/a	n/a
13	POLR2A	chr10:99159879-99160241	K562	blood:	n/a	n/a
14	POLR2A	chr10:99159865-99161430	PBDE	blood:	n/a	n/a
15	MXI1	chr10:99159794-99161342	Hela-S3	cervix:	n/a	n/a
16	POLR2A	chr10:99159892-99161377	K562	blood:	n/a	n/a
17	YY1	chr10:99159942-99160289	HepG2	liver:	n/a	n/a
18	MAFF	chr10:99159710-99160224	HepG2	liver:	n/a	n/a
19	POLR2A	chr10:99159821-99161373	Hela-S3	cervix:	n/a	n/a
20	POLR2A	chr10:99159812-99160474	K562	blood:	n/a	n/a
21	ATF3	chr10:99159737-99160314	K562	blood:	n/a	chr10:99159942-99159956
22	POLR2A	chr10:99159630-99161517	Hela-S3	cervix:	n/a	n/a
23	STAT3	chr10:99159829-99160028	MCF10A-Er-Src	breast:	n/a	n/a
24	FOSL2	chr10:99159771-99160220	MCF-7	breast:	n/a	chr10:99160008-99160015
25	POLR2A	chr10:99159872-99160328	K562	blood:	n/a	n/a
26	CCNT2	chr10:99159842-99160299	K562	blood:	n/a	n/a
27	MAX	chr10:99159922-99160335	HepG2	liver:	n/a	n/a
28	POLR2A	chr10:99159893-99160300	MCF-7	breast:	n/a	n/a
29	MAX	chr10:99159858-99160377	SK-N-SH	brain:	n/a	n/a
30	CREB1	chr10:99159891-99160201	A549	lung:	n/a	n/a
31	FOS	chr10:99159759-99160129	MCF10A-Er-Src	breast:	n/a	chr10:99160008-99160015
32	JUND	chr10:99159887-99160083	H1-hESC	embryonic stem cell:	n/a	chr10:99160008-99160015
33	TBP	chr10:99159856-99160405	HepG2	liver:	n/a	n/a
34	MAX	chr10:99159804-99161355	HepG2	liver:	n/a	n/a
35	MYC	chr10:99159830-99160161	MCF10A-Er-Src	breast:	n/a	n/a
36	POLR2A	chr10:99159872-99161364	HL-60	blood:	n/a	n/a
37	POLR2A	chr10:99159775-99160450	HepG2	liver:	n/a	n/a
38	RCOR1	chr10:99159847-99160290	K562	blood:	n/a	n/a
39	MXI1	chr10:99159941-99161395	GM12878	blood:	n/a	n/a
40	POLR2A	chr10:99159884-99161326	HUVEC	blood vessel:	n/a	n/a
41	MAX	chr10:99159793-99161351	NB4	blood:	n/a	n/a
42	MAFK	chr10:99159810-99160095	HepG2	liver:	n/a	n/a
43	RFX5	chr10:99159929-99160461	HepG2	liver:	n/a	n/a
44	CTCF	chr10:99159860-99160010	HepG2	liver:	n/a	n/a
45	MAX	chr10:99159808-99161324	ECC-1	luminal epithelium:	n/a	n/a
46	SIN3A	chr10:99159847-99161334	H1-hESC	embryonic stem cell:	n/a	chr10:99160455-99160465
47	FOSL2	chr10:99159715-99160251	A549	lung:	n/a	chr10:99160008-99160015
48	POLR2A	chr10:99159865-99160395	Hela-S3	cervix:	n/a	n/a
49	MXI1	chr10:99159830-99160225	K562	blood:	n/a	n/a
50	MYC	chr10:99159871-99161311	NB4	blood:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99159358..99162440-chr10:99256931..99260180,3	MCF-7	breast:
2	chr10:99158229..99164055-chr10:99184399..99190088,9	MCF-7	breast:
3	chr10:99159690..99162699-chr10:99184060..99186818,5	K562	blood:
4	chr10:99158767..99161294-chr10:99204142..99206207,3	K562	blood:
5	chr10:99102792..99105740-chr10:99158426..99160016,2	K562	blood:
6	chr10:99145838..99147761-chr10:99158745..99160617,2	K562	blood:
7	chr10:99149313..99151551-chr10:99158288..99160228,2	MCF-7	breast:
8	chr10:99158733..99161055-chr10:99257726..99260280,2	MCF-7	breast:
9	chr10:99158602..99162553-chr10:99184335..99188453,6	MCF-7	breast:
10	chr10:99158578..99161453-chr10:99205742..99208123,2	MCF-7	breast:
11	chr10:99159614..99162570-chr10:99184923..99189339,4	K562	blood:
12	chr10:99077463..99079313-chr10:99158629..99160425,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000231970	TF binding region
ENSG00000171314	Chromatin interaction
ENSG00000165886	Chromatin interaction
ENSG00000171307	Chromatin interaction
ENSG00000155229	Chromatin interaction
ENSG00000171311	Chromatin interaction
ENSG00000165879	Chromatin interaction
ENSG00000224474	Chromatin interaction
ENSG00000052749	Chromatin interaction

Extended variants
information (count: 150 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs10444013	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10444014	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10444016	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1048442	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048445	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10786336	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10786337	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786338	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786339	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786340	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786341	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786342	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786343	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10786344	0.95[CEU][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10786345	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10786346	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10786347	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10882888	0.93[CHB][hapmap]
rs10882900	0.88[CHB][hapmap];0.80[ASN][1000 genomes]
rs10882903	0.87[CEU][hapmap];0.80[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10882904	0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882907	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882908	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882909	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882910	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882911	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882912	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882914	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882915	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882916	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882917	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882922	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882924	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882926	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882929	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10882930	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10882931	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10882934	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11189144	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11189156	0.87[ASN][1000 genomes]
rs11189157	0.88[ASN][1000 genomes]
rs11189159	0.86[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs11189163	0.88[ASN][1000 genomes]
rs11189165	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11189167	0.88[ASN][1000 genomes]
rs11189168	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11189172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189173	0.86[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs11189174	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189175	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189177	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189178	0.95[CEU][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189179	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189180	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189181	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189182	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189183	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189191	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11189192	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11189193	0.97[ASN][1000 genomes]
rs11189195	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11189196	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11189197	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11189200	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11189203	0.81[AFR][1000 genomes]
rs11189204	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11189206	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11189208	0.80[CEU][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11812223	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11814021	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11817852	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11817875	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12218483	0.93[ASN][1000 genomes]
rs12258560	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12266723	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12359257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12412478	0.93[ASN][1000 genomes]
rs12415424	0.85[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs1537645	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1537646	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1547328	0.87[ASN][1000 genomes]
rs17112674	0.91[CEU][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.80[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs17112676	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17504745	0.87[ASN][1000 genomes]
rs1810983	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2275089	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2275090	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2275581	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs2275582	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2297667	1.00[CEU][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2297668	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297988	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2861878	0.87[ASN][1000 genomes]
rs3737194	0.91[CEU][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs3814553	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3818787	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3818908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4268448	0.87[ASN][1000 genomes]
rs4635018	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60237341	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61861861	0.93[ASN][1000 genomes]
rs61861870	0.98[ASN][1000 genomes]
rs61861912	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61863813	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61863815	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61863816	0.89[ASN][1000 genomes]
rs61863819	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584126	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584127	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584128	0.95[CEU][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7074511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7074678	0.82[CHB][hapmap]
rs7078004	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7078782	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7084654	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7088410	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7092350	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7092499	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7096801	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72838764	0.93[ASN][1000 genomes]
rs7895695	0.86[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7896100	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7900255	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7903562	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7903847	0.91[ASN][1000 genomes]
rs7905026	0.88[ASN][1000 genomes]
rs7909345	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7916665	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7917752	0.87[ASN][1000 genomes]
rs7918742	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7918948	0.93[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs7921585	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7922512	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7923385	0.87[CEU][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes]
rs7924254	0.88[ASN][1000 genomes]
rs869967	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs954149	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9787426	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9787454	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9887991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9887994	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9888026	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9888116	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467437	chr10:99115683-99167436	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv552023	chr10:99115683-99167436	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467438	chr10:99126249-99173870	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv552024	chr10:99126249-99173870	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv467440	chr10:99134784-99204791	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv552025	chr10:99134784-99204791	Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs9888117	RRP12	cis	Heart Left Ventricle	GTEx
rs9888117	RRP12	cis	lymphoblastoid	seeQTL
rs9888117	FRAT1	cis	multi-tissue	Pritchard
rs9888117	RP11-452K12.7	cis	Whole Blood	GTEx
rs9888117	FRAT2	cis	multi-tissue	Pritchard
rs9888117	RRP12	cis	parietal	SCAN
rs9888117	KIAA0690	cis	multi-tissue	Pritchard
rs9888117	RRP12	cis	cerebellum	SCAN
rs9888117	RRP12	cis	Muscle Skeletal	GTEx
rs9888117	MMS19	cis	cerebellum	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99150600-99160000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:99150800-99160000	Weak transcription	Esophagus	oesophagus
3	chr10:99151000-99160000	Weak transcription	Ovary	ovary
4	chr10:99153800-99160000	Weak transcription	Gastric	stomach
5	chr10:99154600-99160000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr10:99154600-99160000	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:99154800-99160000	Weak transcription	Small Intestine	intestine
8	chr10:99156200-99160000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:99156200-99160400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:99156400-99160000	Weak transcription	Spleen	Spleen
11	chr10:99156600-99160000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:99156600-99160000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:99157200-99160400	Weak transcription	Aorta	Aorta
14	chr10:99157600-99160000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:99157600-99160000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:99157600-99160000	Weak transcription	Left Ventricle	heart
17	chr10:99157600-99160000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:99157800-99160000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:99159400-99161200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:99159400-99161600	Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr10:99159600-99160000	Enhancers	Primary B cells from cord blood	blood
22	chr10:99159600-99160000	Enhancers	Primary B cells from peripheral blood	blood
23	chr10:99159600-99160000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:99159600-99160000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:99159600-99160000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr10:99159600-99160000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr10:99159600-99160000	Enhancers	Lung	lung
28	chr10:99159600-99160000	Active TSS	Right Ventricle	heart
29	chr10:99159600-99160000	Active TSS	HepG2	liver
30	chr10:99159600-99160200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:99159600-99160400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:99159600-99160400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:99159600-99160600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr10:99159600-99160600	Flanking Active TSS	Dnd41	blood
35	chr10:99159600-99160600	Flanking Active TSS	Hela-S3	cervix
36	chr10:99159600-99160600	Flanking Active TSS	HMEC	breast
37	chr10:99159600-99160600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr10:99159600-99160600	Flanking Active TSS	NH-A	brain
39	chr10:99159600-99160800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:99159600-99161200	Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr10:99159600-99161200	Active TSS	K562	blood
42	chr10:99159600-99161400	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr10:99159600-99161400	Active TSS	Psoas Muscle	Psoas
44	chr10:99159600-99161400	Active TSS	HSMMtube	muscle
45	chr10:99159600-99161800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
46	chr10:99159800-99160000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr10:99159800-99160000	Active TSS	H1 Cell Line	embryonic stem cell
48	chr10:99159800-99160000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:99159800-99160000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:99159800-99160000	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell

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