Variant report

Variant	rs10887942
Chromosome Location	chr10:91070051-91070052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91064364..91065915-chr10:91069467..91071005,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10788641	0.90[EUR][1000 genomes]
rs10887945	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887946	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10887947	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10887948	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11203064	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203065	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203078	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1141862	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12220939	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs191027	0.82[EUR][1000 genomes]
rs304492	0.81[AMR][1000 genomes]
rs304501	0.82[EUR][1000 genomes]
rs304502	0.84[AMR][1000 genomes]
rs304503	0.84[AMR][1000 genomes]
rs304505	0.83[AMR][1000 genomes]
rs304506	0.83[AMR][1000 genomes]
rs304508	0.82[EUR][1000 genomes]
rs4934472	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs627496	0.85[EUR][1000 genomes]
rs781501	0.92[AMR][1000 genomes]
rs812451	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10887942	IFIT5	Cis_1M	lymphoblastoid	RTeQTL
rs10887942	IFIT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91063200-91074600	Weak transcription	Fetal Intestine Small	intestine
2	chr10:91063200-91076000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:91063400-91072600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:91063800-91070400	Weak transcription	Fetal Kidney	kidney
5	chr10:91063800-91074200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:91064000-91072800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:91064200-91086600	Weak transcription	Hela-S3	cervix
8	chr10:91066200-91070800	Weak transcription	Fetal Intestine Large	intestine
9	chr10:91066400-91074200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:91066600-91070400	Weak transcription	Fetal Thymus	thymus
11	chr10:91066600-91073200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:91066600-91074200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:91066600-91074600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:91066600-91075400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr10:91066800-91072000	Weak transcription	Lung	lung
16	chr10:91066800-91073400	Weak transcription	Brain Substantia Nigra	brain
17	chr10:91067000-91074000	Weak transcription	Brain Hippocampus Middle	brain
18	chr10:91067000-91074400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:91067200-91070400	Weak transcription	Fetal Stomach	stomach
20	chr10:91067200-91073400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:91067200-91076000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:91067400-91072800	Weak transcription	Fetal Brain Male	brain
23	chr10:91067600-91071000	Weak transcription	Spleen	Spleen
24	chr10:91067600-91071000	Weak transcription	HSMM	muscle
25	chr10:91067600-91076000	Weak transcription	Brain Anterior Caudate	brain
26	chr10:91067800-91071000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr10:91067800-91073000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr10:91067800-91074200	Weak transcription	Brain Angular Gyrus	brain
29	chr10:91067800-91074600	Weak transcription	Fetal Lung	lung
30	chr10:91068000-91071400	Weak transcription	Primary T cells from cord blood	blood
31	chr10:91068400-91070800	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:91069000-91070600	Weak transcription	Ovary	ovary
33	chr10:91069000-91074000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:91069000-91074200	Weak transcription	Fetal Muscle Leg	muscle
35	chr10:91069200-91070200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:91069200-91070400	Enhancers	Fetal Heart	heart
37	chr10:91069200-91070600	Enhancers	NHDF-Ad	bronchial
38	chr10:91069200-91070800	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr10:91069200-91070800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:91069200-91070800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr10:91069200-91071000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr10:91069200-91071200	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr10:91069200-91074200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr10:91069400-91070200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr10:91069400-91070200	Enhancers	Osteobl	bone
46	chr10:91069400-91070600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:91069400-91070600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr10:91069400-91070800	Weak transcription	Liver	Liver
49	chr10:91069400-91071000	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr10:91069400-91071000	Weak transcription	Fetal Muscle Trunk	muscle

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