Variant report

Variant	rs781501
Chromosome Location	chr10:91125688-91125689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10788641	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10887942	0.92[AMR][1000 genomes]
rs10887945	0.92[AMR][1000 genomes]
rs10887946	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10887947	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10887948	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11203064	0.92[AMR][1000 genomes]
rs11203065	0.86[AMR][1000 genomes]
rs11203078	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1141862	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12220939	0.86[AMR][1000 genomes]
rs188591	0.86[AMR][1000 genomes]
rs191027	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2484046	0.80[AMR][1000 genomes]
rs303171	0.80[AMR][1000 genomes]
rs303209	0.85[AMR][1000 genomes]
rs303210	0.85[AMR][1000 genomes]
rs303213	0.86[AMR][1000 genomes]
rs303215	0.86[AMR][1000 genomes]
rs303216	0.86[AMR][1000 genomes]
rs303218	0.86[AMR][1000 genomes]
rs304434	0.80[AMR][1000 genomes]
rs304437	0.82[AMR][1000 genomes]
rs304441	0.82[AMR][1000 genomes]
rs304442	0.82[AMR][1000 genomes]
rs304450	0.80[AMR][1000 genomes]
rs304492	0.89[AMR][1000 genomes]
rs304497	0.82[AMR][1000 genomes]
rs304500	0.84[AMR][1000 genomes]
rs304501	0.89[EUR][1000 genomes]
rs304502	0.89[AMR][1000 genomes]
rs304503	0.89[AMR][1000 genomes]
rs304505	0.91[AMR][1000 genomes]
rs304506	0.91[AMR][1000 genomes]
rs304508	0.89[EUR][1000 genomes]
rs305374	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4934472	0.92[AMR][1000 genomes]
rs627127	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs627496	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs812451	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs781501	IFIT5	Cis_1M	lymphoblastoid	RTeQTL
rs781501	IFIT5	cis	Nerve Tibial	GTEx

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91112400-91127400	Weak transcription	Left Ventricle	heart
2	chr10:91117000-91127800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:91117200-91127400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:91117200-91127400	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:91119600-91133800	Weak transcription	Pancreas	Pancrea
6	chr10:91120000-91127200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:91120400-91127000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:91121000-91127200	Weak transcription	Fetal Intestine Large	intestine
9	chr10:91122600-91127400	Weak transcription	Placenta	Placenta
10	chr10:91122600-91127400	Weak transcription	Right Atrium	heart
11	chr10:91122600-91128600	Weak transcription	Ovary	ovary
12	chr10:91122800-91127200	Weak transcription	Fetal Intestine Small	intestine
13	chr10:91123800-91128800	Weak transcription	Colon Smooth Muscle	Colon
14	chr10:91124000-91127200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:91124000-91127200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:91124000-91128000	Weak transcription	NHLF	lung
17	chr10:91124000-91129000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr10:91124000-91129000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:91124000-91130400	Weak transcription	K562	blood
20	chr10:91124200-91127200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr10:91124200-91127200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:91124200-91127200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr10:91124200-91127400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr10:91124200-91127400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:91124200-91127600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr10:91124800-91128000	Weak transcription	HSMMtube	muscle
27	chr10:91124800-91128800	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr10:91125000-91127200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:91125000-91127200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:91125000-91127400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:91125000-91127600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:91125000-91128800	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr10:91125000-91128800	Weak transcription	Psoas Muscle	Psoas
34	chr10:91125200-91127000	Weak transcription	GM12878-XiMat	blood
35	chr10:91125200-91128800	Weak transcription	Fetal Heart	heart

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