Variant report

Variant	rs10888571
Chromosome Location	chr1:150047928-150047929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150045133..150046720-chr1:150047065..150048856,2	MCF-7	breast:
2	chr1:150046481..150048286-chr1:150058057..150060718,2	K562	blood:
3	chr1:150039399..150044958-chr1:150046678..150048939,7	K562	blood:
4	chr1:150038983..150041057-chr1:150046382..150049857,3	MCF-7	breast:
5	chr1:150038609..150041088-chr1:150047588..150050887,5	MCF-7	breast:
6	chr1:150047834..150051741-chr1:150120632..150125901,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136631	Chromatin interaction
ENSG00000023902	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10788868	0.92[AFR][1000 genomes]
rs1545761	0.84[AFR][1000 genomes]
rs6587748	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases
2	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150040000-150050200	Weak transcription	Spleen	Spleen
2	chr1:150040200-150090800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:150040400-150049800	Weak transcription	Ovary	ovary
4	chr1:150040400-150049800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:150040400-150050000	Weak transcription	Lung	lung
6	chr1:150040400-150056400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:150040400-150061600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr1:150040400-150078800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:150040400-150082800	Weak transcription	Small Intestine	intestine
10	chr1:150040400-150086800	Weak transcription	Esophagus	oesophagus
11	chr1:150040400-150121400	Weak transcription	Pancreas	Pancrea
12	chr1:150040600-150048200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr1:150040600-150072200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr1:150040600-150092000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr1:150040800-150048400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr1:150040800-150048800	Weak transcription	Primary B cells from cord blood	blood
17	chr1:150040800-150049000	Weak transcription	Primary T cells from cord blood	blood
18	chr1:150040800-150049800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr1:150040800-150049800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:150040800-150049800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr1:150040800-150054400	Weak transcription	Aorta	Aorta
22	chr1:150041000-150048200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr1:150041000-150048200	Weak transcription	Fetal Brain Female	brain
24	chr1:150041000-150048800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr1:150041000-150049200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr1:150041000-150049800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr1:150041000-150049800	Weak transcription	Thymus	Thymus
28	chr1:150041000-150049800	Weak transcription	HSMMtube	muscle
29	chr1:150041000-150053600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr1:150041000-150064000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr1:150041000-150114400	Weak transcription	Right Ventricle	heart
32	chr1:150041200-150048800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr1:150041200-150049200	Weak transcription	HepG2	liver
34	chr1:150041200-150049800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr1:150041200-150054800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr1:150041400-150048600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr1:150041400-150048800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr1:150041400-150049200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr1:150041400-150049200	Weak transcription	Brain Substantia Nigra	brain
40	chr1:150041400-150049200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr1:150041400-150049200	Weak transcription	NHLF	lung
42	chr1:150041400-150050000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr1:150041400-150053600	Weak transcription	Fetal Kidney	kidney
44	chr1:150041400-150055800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr1:150041400-150056000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr1:150041400-150066000	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr1:150041400-150067800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr1:150041400-150069200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:150041800-150058200	Strong transcription	Osteobl	bone
50	chr1:150042200-150049200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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