Variant report

Variant	rs1545761
Chromosome Location	chr1:150033887-150033888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:149975324..149977331-chr1:150032662..150034472,2	MCF-7	breast:
2	chr1:150033546..150035301-chr1:150123056..150125109,2	K562	blood:
3	chr1:150032474..150034283-chr1:150044859..150046740,2	K562	blood:
4	chr1:150027925..150032582-chr1:150032961..150038144,5	K562	blood:
5	chr1:149855827..149861924-chr1:150032527..150042362,32	MCF-7	breast:
6	chr1:150033022..150034757-chr1:150094327..150096253,2	MCF-7	breast:
7	chr1:149857400..149861626-chr1:150030764..150036830,9	MCF-7	breast:
8	chr1:150023241..150025135-chr1:150032252..150034875,2	K562	blood:
9	chr1:149856326..149859567-chr1:150031013..150033974,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000184270	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000184260	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10157931	1.00[EUR][1000 genomes]
rs10158314	1.00[EUR][1000 genomes]
rs10494262	1.00[EUR][1000 genomes]
rs10494265	1.00[EUR][1000 genomes]
rs10788868	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10888571	0.84[AFR][1000 genomes]
rs13374103	1.00[EUR][1000 genomes]
rs13375753	1.00[EUR][1000 genomes]
rs16833279	1.00[EUR][1000 genomes]
rs16833591	1.00[EUR][1000 genomes]
rs16835652	1.00[EUR][1000 genomes]
rs3118123	1.00[EUR][1000 genomes]
rs57788184	1.00[EUR][1000 genomes]
rs57819791	1.00[EUR][1000 genomes]
rs59821426	1.00[EUR][1000 genomes]
rs60109648	1.00[EUR][1000 genomes]
rs60307722	1.00[EUR][1000 genomes]
rs60616215	1.00[EUR][1000 genomes]
rs6587748	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6671747	1.00[EUR][1000 genomes]
rs6689338	1.00[EUR][1000 genomes]
rs6689495	1.00[EUR][1000 genomes]
rs73011246	1.00[EUR][1000 genomes]
rs73011248	1.00[EUR][1000 genomes]
rs73011264	1.00[EUR][1000 genomes]
rs73011271	1.00[EUR][1000 genomes]
rs73011273	1.00[EUR][1000 genomes]
rs73011380	1.00[EUR][1000 genomes]
rs73016142	1.00[EUR][1000 genomes]
rs73016148	1.00[EUR][1000 genomes]
rs74124337	1.00[EUR][1000 genomes]
rs74124339	1.00[EUR][1000 genomes]
rs7520088	1.00[EUR][1000 genomes]
rs7527755	1.00[EUR][1000 genomes]
rs946521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases
2	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149996600-150037000	Weak transcription	Left Ventricle	heart
2	chr1:150017600-150037600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:150018200-150038600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr1:150022800-150037200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:150022800-150038600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:150031800-150036400	Weak transcription	Ovary	ovary
7	chr1:150032600-150037800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:150032800-150038600	Weak transcription	Fetal Intestine Small	intestine
9	chr1:150033200-150034200	Enhancers	Rectal Smooth Muscle	rectum
10	chr1:150033200-150034400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:150033200-150034400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:150033200-150034400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:150033200-150034400	Enhancers	Fetal Kidney	kidney
14	chr1:150033400-150034000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:150033400-150034200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:150033400-150034200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:150033400-150034200	Enhancers	Brain Anterior Caudate	brain
18	chr1:150033400-150034200	Enhancers	Fetal Stomach	stomach
19	chr1:150033400-150034200	Enhancers	K562	blood
20	chr1:150033400-150034200	Enhancers	Osteobl	bone
21	chr1:150033400-150034400	Enhancers	NHEK	skin
22	chr1:150033400-150034400	Enhancers	NHLF	lung
23	chr1:150033600-150034000	Enhancers	HSMMtube	muscle
24	chr1:150033600-150034200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:150033600-150034200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:150033600-150034200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:150033600-150034200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr1:150033600-150034200	Enhancers	Colon Smooth Muscle	Colon
29	chr1:150033600-150034200	Enhancers	Right Ventricle	heart
30	chr1:150033600-150034200	Enhancers	HMEC	breast
31	chr1:150033600-150034400	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr1:150033600-150034400	Enhancers	NHDF-Ad	bronchial
33	chr1:150033600-150034600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:150033800-150034000	Enhancers	Right Atrium	heart
35	chr1:150033800-150034000	Enhancers	NH-A	brain
36	chr1:150033800-150034200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr1:150033800-150034200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr1:150033800-150034200	Enhancers	Aorta	Aorta
39	chr1:150033800-150034200	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr1:150033800-150034200	Enhancers	Placenta Amnion	Placenta Amnion
41	chr1:150033800-150034200	Enhancers	Stomach Mucosa	stomach
42	chr1:150033800-150034200	Enhancers	Stomach Smooth Muscle	stomach
43	chr1:150033800-150038800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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