Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:150003443..150005819-chr1:150028195..150029802,2	MCF-7	breast:
2	chr1:149980202..149982705-chr1:150004768..150008210,3	MCF-7	breast:
3	chr1:150005129..150006632-chr1:150011693..150013919,2	MCF-7	breast:
4	chr1:150001605..150003568-chr1:150005160..150008934,3	K562	blood:
5	chr1:150005167..150006817-chr1:150009728..150012726,2	K562	blood:
6	chr1:150003285..150005353-chr1:150007041..150008892,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163113	Chromatin interaction

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10158314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10494262	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10494265	0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10788868	1.00[EUR][1000 genomes]
rs13374103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13375753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1545761	1.00[EUR][1000 genomes]
rs16833279	1.00[EUR][1000 genomes]
rs16833591	0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3118123	1.00[EUR][1000 genomes]
rs57788184	1.00[EUR][1000 genomes]
rs57819791	1.00[EUR][1000 genomes]
rs59821426	1.00[EUR][1000 genomes]
rs60109648	1.00[EUR][1000 genomes]
rs60307722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60616215	1.00[EUR][1000 genomes]
rs6587748	1.00[EUR][1000 genomes]
rs6689495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73011246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73011248	1.00[EUR][1000 genomes]
rs73011264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73011271	1.00[EUR][1000 genomes]
rs73011273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73016142	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73016148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124337	1.00[EUR][1000 genomes]
rs74124339	1.00[EUR][1000 genomes]
rs7520088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7527755	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs946521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149985600-150022000	Weak transcription	Brain Substantia Nigra	brain
2	chr1:149993800-150005400	Weak transcription	Fetal Heart	heart
3	chr1:149996600-150037000	Weak transcription	Left Ventricle	heart
4	chr1:150003800-150022400	Weak transcription	Fetal Intestine Small	intestine
5	chr1:150004600-150005400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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