Variant report

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:149857111..149861042-chr1:150027596..150032191,5	MCF-7	breast:
2	chr1:150027925..150032582-chr1:150032961..150038144,5	K562	blood:
3	chr1:150029169..150032073-chr1:150037083..150039053,2	K562	blood:
4	chr1:149859746..149862142-chr1:150028326..150031401,5	K562	blood:
5	chr1:149859746..149861842-chr1:150028326..150031345,3	K562	blood:
6	chr1:150003443..150005819-chr1:150028195..150029802,2	MCF-7	breast:
7	chr1:150028686..150031993-chr1:150039075..150042074,4	K562	blood:
8	chr1:150020045..150025053-chr1:150028781..150033753,5	MCF-7	breast:
9	chr1:149857741..149860022-chr1:150027435..150029511,4	MCF-7	breast:
10	chr1:150028352..150029866-chr1:150038625..150040747,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10157931	1.00[EUR][1000 genomes]
rs10158314	1.00[EUR][1000 genomes]
rs10494262	1.00[EUR][1000 genomes]
rs10494265	1.00[EUR][1000 genomes]
rs10788868	0.80[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10888571	0.82[AFR][1000 genomes]
rs13374103	1.00[EUR][1000 genomes]
rs13375753	1.00[EUR][1000 genomes]
rs1545761	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16833279	1.00[EUR][1000 genomes]
rs16833591	1.00[EUR][1000 genomes]
rs16835652	1.00[EUR][1000 genomes]
rs3118123	1.00[EUR][1000 genomes]
rs57788184	1.00[EUR][1000 genomes]
rs57819791	1.00[EUR][1000 genomes]
rs59821426	1.00[EUR][1000 genomes]
rs60109648	1.00[EUR][1000 genomes]
rs60307722	1.00[EUR][1000 genomes]
rs60616215	1.00[EUR][1000 genomes]
rs6671747	1.00[EUR][1000 genomes]
rs6689338	1.00[EUR][1000 genomes]
rs6689495	1.00[EUR][1000 genomes]
rs73011246	1.00[EUR][1000 genomes]
rs73011248	1.00[EUR][1000 genomes]
rs73011264	1.00[EUR][1000 genomes]
rs73011271	1.00[EUR][1000 genomes]
rs73011273	1.00[EUR][1000 genomes]
rs73011380	1.00[EUR][1000 genomes]
rs73016142	1.00[EUR][1000 genomes]
rs73016148	1.00[EUR][1000 genomes]
rs74124337	1.00[EUR][1000 genomes]
rs74124339	1.00[EUR][1000 genomes]
rs7520088	1.00[EUR][1000 genomes]
rs7527755	1.00[EUR][1000 genomes]
rs946521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases
2	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
3	nsv947321	chr1:150007387-150030042	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149996600-150037000	Weak transcription	Left Ventricle	heart
2	chr1:150017600-150037600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:150018000-150031600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:150018000-150033400	Weak transcription	Fetal Stomach	stomach
5	chr1:150018200-150038600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:150022800-150032400	Weak transcription	Fetal Intestine Small	intestine
7	chr1:150022800-150037200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:150022800-150038600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:150023000-150033600	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:150026400-150033600	Weak transcription	NHDF-Ad	bronchial
11	chr1:150026400-150033800	Weak transcription	Right Atrium	heart
12	chr1:150026600-150029600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr1:150027800-150029600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr1:150028400-150032400	Weak transcription	Stomach Mucosa	stomach
15	chr1:150029200-150030000	Enhancers	Monocytes-CD14+_RO01746	blood

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