Variant report

Variant	rs60307722
Chromosome Location	chr1:150084605-150084606
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150080225..150082571-chr1:150083125..150085710,3	K562	blood:

Variant related genes	Relation type
ENSG00000136631	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10157931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10158314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10494262	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10494265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10788868	1.00[EUR][1000 genomes]
rs13374103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13375753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1545761	1.00[EUR][1000 genomes]
rs16833279	1.00[EUR][1000 genomes]
rs16833591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16835652	1.00[EUR][1000 genomes]
rs3118123	1.00[EUR][1000 genomes]
rs57788184	1.00[EUR][1000 genomes]
rs57819791	1.00[EUR][1000 genomes]
rs58922427	1.00[EUR][1000 genomes]
rs59082627	1.00[EUR][1000 genomes]
rs59821426	1.00[EUR][1000 genomes]
rs60109648	1.00[EUR][1000 genomes]
rs60616215	1.00[EUR][1000 genomes]
rs6587748	1.00[EUR][1000 genomes]
rs6671747	1.00[EUR][1000 genomes]
rs6689338	1.00[EUR][1000 genomes]
rs6689495	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73011246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73011248	1.00[EUR][1000 genomes]
rs73011264	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73011271	1.00[EUR][1000 genomes]
rs73011273	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73011380	1.00[EUR][1000 genomes]
rs73016142	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73016148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124337	1.00[EUR][1000 genomes]
rs74124339	1.00[EUR][1000 genomes]
rs7520088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7527755	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs946521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150040200-150090800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:150040400-150086800	Weak transcription	Esophagus	oesophagus
3	chr1:150040400-150121400	Weak transcription	Pancreas	Pancrea
4	chr1:150040600-150092000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:150041000-150114400	Weak transcription	Right Ventricle	heart
6	chr1:150042200-150086600	Weak transcription	Gastric	stomach
7	chr1:150042600-150090800	Weak transcription	Stomach Mucosa	stomach
8	chr1:150050600-150084800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:150052000-150116800	Weak transcription	Spleen	Spleen
10	chr1:150055000-150086200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:150055000-150100600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:150055000-150120800	Weak transcription	Aorta	Aorta
13	chr1:150055200-150096000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:150055200-150104800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:150056600-150086400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr1:150057000-150084800	Weak transcription	A549	lung
17	chr1:150060000-150096000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr1:150061000-150116800	Weak transcription	Ovary	ovary
19	chr1:150061800-150084800	Weak transcription	Left Ventricle	heart
20	chr1:150066200-150086600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr1:150066200-150087800	Weak transcription	HSMMtube	muscle
22	chr1:150066200-150096600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:150067000-150113200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr1:150067200-150086400	Weak transcription	HMEC	breast
25	chr1:150067200-150101200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:150067400-150086800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr1:150067400-150087200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr1:150067400-150121200	Weak transcription	Colonic Mucosa	Colon
29	chr1:150068400-150084800	Weak transcription	Psoas Muscle	Psoas
30	chr1:150068600-150084800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr1:150069000-150086800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr1:150069000-150093600	Weak transcription	NHEK	skin
33	chr1:150069000-150113800	Weak transcription	Fetal Kidney	kidney
34	chr1:150069000-150121000	Weak transcription	NHLF	lung
35	chr1:150070400-150084800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:150070400-150087200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr1:150070800-150084800	Weak transcription	Brain Germinal Matrix	brain
38	chr1:150071000-150121000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:150071200-150086400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr1:150071200-150120600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr1:150071400-150092200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr1:150071400-150093400	Weak transcription	Hela-S3	cervix
43	chr1:150071800-150085000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr1:150072000-150084800	Weak transcription	Fetal Intestine Small	intestine
45	chr1:150072400-150121000	Weak transcription	Brain Angular Gyrus	brain
46	chr1:150072800-150085200	Weak transcription	Fetal Brain Male	brain
47	chr1:150073000-150086200	Weak transcription	Fetal Intestine Large	intestine
48	chr1:150073200-150085000	Weak transcription	Colon Smooth Muscle	Colon
49	chr1:150073400-150085400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr1:150073400-150094400	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links