Variant report

Variant	rs16833279
Chromosome Location	chr1:150006658-150006659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10157931	1.00[EUR][1000 genomes]
rs10158314	1.00[EUR][1000 genomes]
rs10494262	1.00[EUR][1000 genomes]
rs10494265	1.00[EUR][1000 genomes]
rs10788868	1.00[EUR][1000 genomes]
rs12063159	1.00[CEU][hapmap]
rs13374103	1.00[EUR][1000 genomes]
rs13375753	1.00[EUR][1000 genomes]
rs13375906	1.00[CEU][hapmap]
rs1545761	1.00[EUR][1000 genomes]
rs16833591	1.00[EUR][1000 genomes]
rs16835153	1.00[AMR][1000 genomes]
rs3118123	1.00[EUR][1000 genomes]
rs4279885	1.00[CHB][hapmap]
rs57788184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57819791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58834873	1.00[AMR][1000 genomes]
rs59821426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60109648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60307722	1.00[EUR][1000 genomes]
rs60477778	1.00[AMR][1000 genomes]
rs60616215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6587748	1.00[EUR][1000 genomes]
rs6689495	1.00[EUR][1000 genomes]
rs73011246	1.00[EUR][1000 genomes]
rs73011248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73011264	1.00[EUR][1000 genomes]
rs73011271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73011273	1.00[EUR][1000 genomes]
rs73011320	1.00[AMR][1000 genomes]
rs73016142	1.00[EUR][1000 genomes]
rs73016148	1.00[EUR][1000 genomes]
rs73020880	1.00[AMR][1000 genomes]
rs74124337	1.00[EUR][1000 genomes]
rs74124339	1.00[EUR][1000 genomes]
rs7518016	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs7520088	1.00[EUR][1000 genomes]
rs7523317	1.00[AMR][1000 genomes]
rs7527755	1.00[EUR][1000 genomes]
rs946521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases
2	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149985600-150022000	Weak transcription	Brain Substantia Nigra	brain
2	chr1:149996600-150037000	Weak transcription	Left Ventricle	heart
3	chr1:150003800-150022400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:150005400-150006800	Enhancers	Fetal Heart	heart
5	chr1:150006600-150022400	Weak transcription	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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