Variant report

Variant	rs73020880
Chromosome Location	chr1:150149157-150149158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150148382..150150067-chr1:150155558..150157916,2	K562	blood:
2	chr1:150122696..150124831-chr1:150149138..150151605,2	K562	blood:
3	chr1:150122610..150124831-chr1:150149138..150151605,3	K562	blood:

Variant related genes	Relation type
ENSG00000023902	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16833279	1.00[AMR][1000 genomes]
rs16835153	1.00[AMR][1000 genomes]
rs16835982	1.00[AMR][1000 genomes]
rs16836792	1.00[AMR][1000 genomes]
rs57788184	1.00[AMR][1000 genomes]
rs57819791	1.00[AMR][1000 genomes]
rs58820446	1.00[AMR][1000 genomes]
rs58834873	1.00[AMR][1000 genomes]
rs59821426	1.00[AMR][1000 genomes]
rs60109648	1.00[AMR][1000 genomes]
rs60477778	1.00[AMR][1000 genomes]
rs60616215	1.00[AMR][1000 genomes]
rs73011248	1.00[AMR][1000 genomes]
rs73011271	1.00[AMR][1000 genomes]
rs73011320	1.00[AMR][1000 genomes]
rs73013116	1.00[AMR][1000 genomes]
rs73017005	1.00[AMR][1000 genomes]
rs73017077	1.00[AMR][1000 genomes]
rs7518016	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv535153	chr1:150147218-150168829	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150138400-150157800	Weak transcription	Small Intestine	intestine
2	chr1:150141600-150150000	Weak transcription	Primary B cells from cord blood	blood
3	chr1:150141600-150158600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr1:150145400-150153000	Weak transcription	Brain Substantia Nigra	brain
5	chr1:150145800-150150400	Weak transcription	Stomach Mucosa	stomach
6	chr1:150145800-150160000	Weak transcription	Right Atrium	heart
7	chr1:150146000-150151800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:150146000-150159200	Weak transcription	HSMMtube	muscle
9	chr1:150146200-150149800	Weak transcription	Fetal Intestine Large	intestine
10	chr1:150146200-150153400	Weak transcription	Brain Anterior Caudate	brain
11	chr1:150146400-150149200	Weak transcription	Fetal Intestine Small	intestine
12	chr1:150146600-150149800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr1:150147200-150159000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr1:150148400-150149200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:150148400-150150200	Enhancers	Adipose Nuclei	Adipose
16	chr1:150148600-150149800	Weak transcription	Placenta	Placenta
17	chr1:150148600-150151800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr1:150148800-150149200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr1:150148800-150149200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr1:150149000-150149800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr1:150149000-150152400	Weak transcription	Primary hematopoietic stem cells	blood

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