Variant report

Variant	rs73017005
Chromosome Location	chr1:150341712-150341713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150241454..150243064-chr1:150340066..150343007,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117362	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16835153	1.00[AMR][1000 genomes]
rs16835982	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836792	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58820446	1.00[AMR][1000 genomes]
rs58834873	1.00[AMR][1000 genomes]
rs60477778	1.00[AMR][1000 genomes]
rs73011271	1.00[AMR][1000 genomes]
rs73011320	1.00[AMR][1000 genomes]
rs73013116	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017077	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019062	1.00[AMR][1000 genomes]
rs73020880	1.00[AMR][1000 genomes]
rs7518016	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150338400-150343800	Weak transcription	Spleen	Spleen
2	chr1:150338400-150405200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:150338800-150343000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:150338800-150343200	Weak transcription	Esophagus	oesophagus
5	chr1:150338800-150346800	Weak transcription	Lung	lung
6	chr1:150339000-150342600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:150339400-150342600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:150339400-150346400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:150339400-150346400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr1:150339400-150346600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:150339400-150348800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr1:150339400-150372800	Weak transcription	Fetal Muscle Leg	muscle
13	chr1:150339400-150390600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr1:150339600-150342400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:150339600-150342600	Weak transcription	Fetal Thymus	thymus
16	chr1:150339600-150343000	Weak transcription	Psoas Muscle	Psoas
17	chr1:150339600-150343000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr1:150339600-150343200	Weak transcription	Left Ventricle	heart
19	chr1:150339600-150343400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr1:150339600-150344800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr1:150339600-150344800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr1:150339600-150345200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:150339600-150345200	Weak transcription	Ovary	ovary
24	chr1:150339600-150345800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr1:150339600-150346000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr1:150339600-150346400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr1:150339600-150346400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr1:150339600-150346400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr1:150339600-150346400	Weak transcription	Right Atrium	heart
30	chr1:150339600-150346600	Weak transcription	Small Intestine	intestine
31	chr1:150339600-150349400	Weak transcription	Fetal Stomach	stomach
32	chr1:150339600-150356400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr1:150339600-150359800	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr1:150339600-150372800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr1:150339800-150342000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr1:150339800-150342000	Enhancers	Liver	Liver
37	chr1:150339800-150342800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr1:150339800-150342800	Weak transcription	Fetal Heart	heart
39	chr1:150339800-150343000	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr1:150339800-150343200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr1:150339800-150343600	Weak transcription	Brain Anterior Caudate	brain
42	chr1:150339800-150346200	Weak transcription	Brain Hippocampus Middle	brain
43	chr1:150339800-150346200	Weak transcription	Colon Smooth Muscle	Colon
44	chr1:150339800-150346400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr1:150339800-150346400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr1:150339800-150346400	Weak transcription	Brain Substantia Nigra	brain
47	chr1:150339800-150346400	Weak transcription	Right Ventricle	heart
48	chr1:150339800-150346400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr1:150339800-150346600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr1:150339800-150347000	Weak transcription	Fetal Lung	lung

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