Variant report
| Variant | rs58834873 |
|---|---|
| Chromosome Location | chr1:150176202-150176203 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:150175985..150178944-chr1:150181899..150184238,2 | K562 | blood: | |
| 2 | chr1:150164304..150165921-chr1:150174618..150176672,2 | MCF-7 | breast: | |
| 3 | chr1:150175161..150177546-chr1:150204659..150206770,2 | K562 | blood: | |
| 4 | chr1:150175820..150177546-chr1:150204659..150207162,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000266187 | Chromatin interaction |
| ENSG00000143401 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs16833279 | 1.00[AMR][1000 genomes] |
| rs16835153 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16835982 | 1.00[AMR][1000 genomes] |
| rs16836792 | 1.00[AMR][1000 genomes] |
| rs57788184 | 1.00[AMR][1000 genomes] |
| rs57819791 | 1.00[AMR][1000 genomes] |
| rs58820446 | 1.00[AMR][1000 genomes] |
| rs59821426 | 1.00[AMR][1000 genomes] |
| rs60109648 | 1.00[AMR][1000 genomes] |
| rs60477778 | 1.00[AMR][1000 genomes] |
| rs60616215 | 1.00[AMR][1000 genomes] |
| rs73011248 | 1.00[AMR][1000 genomes] |
| rs73011271 | 1.00[AMR][1000 genomes] |
| rs73011320 | 1.00[AMR][1000 genomes] |
| rs73013116 | 1.00[AMR][1000 genomes] |
| rs73017005 | 1.00[AMR][1000 genomes] |
| rs73017077 | 1.00[AMR][1000 genomes] |
| rs73020880 | 1.00[AMR][1000 genomes] |
| rs7518016 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529719 | chr1:150006344-150311095 | Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 100 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
