Variant report

Variant	rs73011320
Chromosome Location	chr1:150226756-150226757
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150226594..150229990-chr1:150253466..150255722,4	K562	blood:
2	chr1:150206017..150207811-chr1:150224275..150227225,2	MCF-7	breast:
3	chr1:150225013..150227241-chr1:150292404..150294057,2	K562	blood:
4	chr1:150226746..150229990-chr1:150252728..150255652,4	K562	blood:
5	chr1:150216908..150219830-chr1:150224451..150227819,3	MCF-7	breast:
6	chr1:150216320..150218006-chr1:150224822..150227366,2	K562	blood:
7	chr1:150222634..150224388-chr1:150224660..150227357,2	K562	blood:
8	chr1:150226452..150228331-chr1:150575620..150577164,2	MCF-7	breast:
9	chr1:150211882..150213572-chr1:150226427..150228895,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16833279	1.00[AMR][1000 genomes]
rs16835153	1.00[AMR][1000 genomes]
rs16835982	1.00[AMR][1000 genomes]
rs16836792	1.00[AMR][1000 genomes]
rs57788184	1.00[AMR][1000 genomes]
rs57819791	1.00[AMR][1000 genomes]
rs58820446	1.00[AMR][1000 genomes]
rs58834873	1.00[AMR][1000 genomes]
rs59821426	1.00[AMR][1000 genomes]
rs60109648	1.00[AMR][1000 genomes]
rs60477778	1.00[AMR][1000 genomes]
rs60616215	1.00[AMR][1000 genomes]
rs73011248	1.00[AMR][1000 genomes]
rs73011271	1.00[AMR][1000 genomes]
rs73013116	1.00[AMR][1000 genomes]
rs73017005	1.00[AMR][1000 genomes]
rs73017077	1.00[AMR][1000 genomes]
rs73020880	1.00[AMR][1000 genomes]
rs7518016	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
3	nsv872415	chr1:150210538-150248046	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1009508	chr1:150211112-150270830	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv535154	chr1:150214907-150265508	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150222800-150228000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr1:150223000-150227800	Weak transcription	Fetal Intestine Small	intestine
3	chr1:150223000-150228000	Weak transcription	Fetal Intestine Large	intestine
4	chr1:150223000-150228000	Weak transcription	HepG2	liver
5	chr1:150223200-150227800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr1:150226000-150228000	Weak transcription	A549	lung
7	chr1:150226200-150228000	Weak transcription	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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