Variant report

Variant	rs58922427
Chromosome Location	chr1:150302042-150302043
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150291489..150302169-chr1:150333998..150340807,28	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163125	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10158314	1.00[EUR][1000 genomes]
rs10494265	1.00[EUR][1000 genomes]
rs11204660	1.00[EUR][1000 genomes]
rs13374103	1.00[EUR][1000 genomes]
rs16835652	1.00[EUR][1000 genomes]
rs3118123	1.00[EUR][1000 genomes]
rs56877951	1.00[EUR][1000 genomes]
rs57788184	1.00[EUR][1000 genomes]
rs57819791	1.00[EUR][1000 genomes]
rs59082627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59682561	1.00[EUR][1000 genomes]
rs59684243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59821426	1.00[EUR][1000 genomes]
rs60109648	1.00[EUR][1000 genomes]
rs60307722	1.00[EUR][1000 genomes]
rs60616215	1.00[EUR][1000 genomes]
rs6671747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6680474	1.00[EUR][1000 genomes]
rs6689338	1.00[EUR][1000 genomes]
rs6689495	1.00[EUR][1000 genomes]
rs73011264	1.00[EUR][1000 genomes]
rs73011271	1.00[EUR][1000 genomes]
rs73011273	1.00[EUR][1000 genomes]
rs73011380	1.00[EUR][1000 genomes]
rs74124337	1.00[EUR][1000 genomes]
rs74124339	1.00[EUR][1000 genomes]
rs7520088	1.00[EUR][1000 genomes]
rs7527755	1.00[EUR][1000 genomes]
rs7548450	1.00[EUR][1000 genomes]
rs946521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150294800-150305400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:150295000-150304800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:150295000-150304800	Weak transcription	Fetal Heart	heart
4	chr1:150295200-150304800	Weak transcription	Stomach Mucosa	stomach
5	chr1:150295200-150331800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:150295400-150304800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:150295400-150321200	Strong transcription	Fetal Stomach	stomach
8	chr1:150295400-150329600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:150295600-150321400	Strong transcription	Fetal Intestine Small	intestine
10	chr1:150295600-150328200	Strong transcription	Primary B cells from peripheral blood	blood
11	chr1:150295800-150329800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:150296000-150302200	Strong transcription	GM12878-XiMat	blood
13	chr1:150296000-150329800	Strong transcription	Fetal Intestine Large	intestine
14	chr1:150296000-150329800	Strong transcription	Fetal Thymus	thymus
15	chr1:150296200-150326800	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr1:150296400-150328600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:150296400-150328600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr1:150296600-150302400	Strong transcription	Brain Inferior Temporal Lobe	brain
19	chr1:150296600-150305200	Strong transcription	Brain Angular Gyrus	brain
20	chr1:150296600-150322400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:150296600-150326800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr1:150296600-150327200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr1:150296600-150327200	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr1:150296600-150328400	Strong transcription	Placenta	Placenta
25	chr1:150296600-150328600	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr1:150296600-150328600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:150296600-150328800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr1:150296600-150329600	Strong transcription	Fetal Muscle Trunk	muscle
29	chr1:150296800-150302400	Strong transcription	Primary hematopoietic stem cells	blood
30	chr1:150296800-150302800	Strong transcription	Primary T cells from cord blood	blood
31	chr1:150296800-150302800	Strong transcription	A549	lung
32	chr1:150296800-150319800	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr1:150296800-150321600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
34	chr1:150296800-150323200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:150296800-150328400	Strong transcription	Liver	Liver
36	chr1:150296800-150328600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr1:150296800-150328600	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr1:150296800-150328600	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr1:150296800-150329800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr1:150297000-150309000	Strong transcription	NHEK	skin
41	chr1:150297000-150328000	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr1:150297000-150328200	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr1:150297000-150328600	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr1:150297000-150330000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr1:150297000-150330800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr1:150297200-150302800	Strong transcription	HUVEC	blood vessel
47	chr1:150297200-150303800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr1:150297200-150321800	Strong transcription	Stomach Smooth Muscle	stomach
49	chr1:150297200-150326600	Strong transcription	Fetal Lung	lung
50	chr1:150297200-150328400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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