Variant report

Variant	rs10889000
Chromosome Location	chr1:57100380-57100381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57093284..57096494-chr1:57097572..57100834,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1041604	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs10789035	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10888992	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10888993	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889004	0.85[ASN][1000 genomes]
rs11206878	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11206881	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206882	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12126955	1.00[CEU][hapmap];0.81[GIH][hapmap];0.88[TSI][hapmap]
rs1539382	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1777275	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs2065553	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs2065555	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs2404983	1.00[CEU][hapmap];0.82[GIH][hapmap];0.88[TSI][hapmap]
rs2404988	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2746347	0.85[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];0.91[MEX][hapmap];0.80[MKK][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2746355	1.00[JPT][hapmap]
rs4399186	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4912407	0.86[ASN][1000 genomes]
rs56022783	0.82[ASN][1000 genomes]
rs6588640	1.00[CEU][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74073774	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57098400-57103800	Weak transcription	Hela-S3	cervix
2	chr1:57099200-57100600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:57099400-57101200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:57099400-57101200	Weak transcription	Fetal Heart	heart

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