Variant report

Variant	rs74073774
Chromosome Location	chr1:57108536-57108537
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10789035	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10888992	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10888993	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10889000	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10889004	1.00[ASN][1000 genomes]
rs11206878	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11206881	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11206882	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1539382	0.80[ASN][1000 genomes]
rs2404988	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2796518	0.93[ASN][1000 genomes]
rs4399186	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4912407	0.99[ASN][1000 genomes]
rs56022783	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6588640	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74073771	0.81[AFR][1000 genomes]
rs74073777	0.81[AFR][1000 genomes]
rs857152	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57103200-57109000	Weak transcription	Fetal Heart	heart
2	chr1:57105600-57109000	Weak transcription	HepG2	liver
3	chr1:57105600-57109200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:57105600-57109400	Weak transcription	NHDF-Ad	bronchial
5	chr1:57105600-57110000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:57105600-57110200	Weak transcription	HSMMtube	muscle
7	chr1:57105800-57109800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:57108400-57109800	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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