Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1041604	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs10789035	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10888992	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10888993	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10889000	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10889004	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11206878	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11206881	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11206882	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12126955	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs1539382	0.80[ASN][1000 genomes]
rs1777275	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs2065553	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs2065555	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs2404983	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs2404988	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2746347	0.81[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap]
rs2746355	1.00[JPT][hapmap]
rs2796518	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4399186	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4912407	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs56022783	0.97[ASN][1000 genomes]
rs74073774	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857152	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57103200-57109000	Weak transcription	Fetal Heart	heart
2	chr1:57105600-57109000	Weak transcription	HepG2	liver
3	chr1:57105600-57109200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:57105600-57109400	Weak transcription	NHDF-Ad	bronchial
5	chr1:57105600-57110000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:57105600-57110200	Weak transcription	HSMMtube	muscle
7	chr1:57105800-57109800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:57108400-57109800	Enhancers	Hela-S3	cervix

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