Variant report

Variant	rs10889363
Chromosome Location	chr1:63194009-63194010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11207978	1.00[ASN][1000 genomes]
rs11208008	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208010	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130333	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12401837	0.94[EUR][1000 genomes]
rs12403212	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61775963	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912540	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10889363	DOCK7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63187200-63195200	Weak transcription	Fetal Stomach	stomach
2	chr1:63187400-63198000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:63188600-63194200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:63190200-63195800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:63190400-63194800	Weak transcription	Brain Angular Gyrus	brain
6	chr1:63191200-63194600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr1:63191200-63194800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr1:63191800-63194600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:63191800-63198000	Weak transcription	Fetal Intestine Small	intestine
10	chr1:63191800-63199400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:63192000-63194200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:63192000-63194200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:63192000-63194400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:63192000-63194800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr1:63192000-63194800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr1:63192000-63197800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr1:63192000-63201200	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:63192200-63194600	Weak transcription	HepG2	liver
19	chr1:63192200-63194800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:63192200-63198000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr1:63193400-63194200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:63193400-63194200	Enhancers	Brain Anterior Caudate	brain
23	chr1:63193600-63198000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr1:63193800-63194200	Enhancers	Osteobl	bone
25	chr1:63193800-63194800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr1:63193800-63194800	Weak transcription	Stomach Mucosa	stomach
27	chr1:63193800-63195000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:63193800-63197000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr1:63193800-63197800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr1:63193800-63198000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr1:63193800-63201400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr1:63194000-63195400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr1:63194000-63197600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr1:63194000-63197800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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