Variant report

Variant	rs11208008
Chromosome Location	chr1:63190794-63190795
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10889363	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11207978	1.00[ASN][1000 genomes]
rs11208010	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130333	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12401837	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12403212	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182869	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61775963	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912540	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11208008	DOCK7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63187000-63191000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr1:63187200-63190800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:63187200-63191000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:63187200-63191800	Weak transcription	K562	blood
5	chr1:63187200-63195200	Weak transcription	Fetal Stomach	stomach
6	chr1:63187400-63190800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:63187400-63191000	Weak transcription	Fetal Intestine Small	intestine
8	chr1:63187400-63191200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr1:63187400-63198000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:63188200-63191000	Enhancers	GM12878-XiMat	blood
11	chr1:63188200-63191600	Weak transcription	Fetal Intestine Large	intestine
12	chr1:63188600-63194200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:63189000-63191000	Weak transcription	HepG2	liver
14	chr1:63189200-63190800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:63189200-63190800	Enhancers	Left Ventricle	heart
16	chr1:63189200-63191000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:63189800-63190800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:63189800-63190800	Enhancers	Brain Anterior Caudate	brain
19	chr1:63189800-63190800	Enhancers	Osteobl	bone
20	chr1:63189800-63191000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:63189800-63191000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:63189800-63192000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:63189800-63192000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr1:63189800-63192000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:63189800-63192000	Enhancers	Adipose Nuclei	Adipose
26	chr1:63189800-63192000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr1:63189800-63192400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:63189800-63193800	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr1:63190000-63190800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr1:63190000-63190800	Flanking Active TSS	NHDF-Ad	bronchial
31	chr1:63190000-63191000	Weak transcription	NH-A	brain
32	chr1:63190000-63192000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr1:63190000-63192000	Enhancers	Brain Hippocampus Middle	brain
34	chr1:63190000-63192000	Enhancers	Colonic Mucosa	Colon
35	chr1:63190000-63192000	Enhancers	Colon Smooth Muscle	Colon
36	chr1:63190000-63192000	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr1:63190200-63190800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr1:63190200-63190800	Weak transcription	Right Atrium	heart
39	chr1:63190200-63190800	Weak transcription	NHLF	lung
40	chr1:63190200-63191200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr1:63190200-63191400	Active TSS	Aorta	Aorta
42	chr1:63190200-63192000	Enhancers	Stomach Mucosa	stomach
43	chr1:63190200-63192200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr1:63190200-63192200	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr1:63190200-63195800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr1:63190400-63190800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr1:63190400-63191200	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr1:63190400-63192000	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr1:63190400-63192000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:63190400-63193600	Enhancers	Rectal Mucosa Donor 29	rectum

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