Variant report

Variant	rs2182869
Chromosome Location	chr1:63194650-63194651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10889363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11207978	1.00[ASN][1000 genomes]
rs11208008	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208010	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130333	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12401837	0.94[EUR][1000 genomes]
rs12403212	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61775963	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912540	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2182869	DOCK7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63187200-63195200	Weak transcription	Fetal Stomach	stomach
2	chr1:63187400-63198000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:63190200-63195800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:63190400-63194800	Weak transcription	Brain Angular Gyrus	brain
5	chr1:63191200-63194800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr1:63191800-63198000	Weak transcription	Fetal Intestine Small	intestine
7	chr1:63191800-63199400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr1:63192000-63194800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:63192000-63194800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:63192000-63197800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:63192000-63201200	Weak transcription	Colon Smooth Muscle	Colon
12	chr1:63192200-63194800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:63192200-63198000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr1:63193600-63198000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr1:63193800-63194800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:63193800-63194800	Weak transcription	Stomach Mucosa	stomach
17	chr1:63193800-63195000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:63193800-63197000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:63193800-63197800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:63193800-63198000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr1:63193800-63201400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:63194000-63195400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr1:63194000-63197600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:63194000-63197800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:63194200-63197600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr1:63194200-63197800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr1:63194200-63199400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:63194400-63195000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr1:63194600-63195200	Enhancers	Brain Anterior Caudate	brain
30	chr1:63194600-63195400	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr1:63194600-63196000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr1:63194600-63202000	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links