Variant report

Variant	rs10889674
Chromosome Location	chr1:67717528-67717529
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10489628	0.90[ASN][1000 genomes]
rs10889673	1.00[ASN][1000 genomes]
rs10889676	1.00[ASN][1000 genomes]
rs10889677	1.00[ASN][1000 genomes]
rs11465802	0.82[ASN][1000 genomes]
rs12030107	0.96[ASN][1000 genomes]
rs12030948	0.96[ASN][1000 genomes]
rs12031203	0.96[ASN][1000 genomes]
rs12567232	0.96[ASN][1000 genomes]
rs12743974	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1343152	0.97[ASN][1000 genomes]
rs2180294	0.99[ASN][1000 genomes]
rs2201841	0.96[ASN][1000 genomes]
rs35380856	1.00[ASN][1000 genomes]
rs35427944	0.83[ASN][1000 genomes]
rs4655529	0.92[ASN][1000 genomes]
rs6665959	0.84[ASN][1000 genomes]
rs6686950	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1243	chr1:67700289-67745337	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67703800-67722000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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