Variant report
| Variant | rs10489628 |
|---|---|
| Chromosome Location | chr1:67704107-67704108 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:67695892..67697817-chr1:67702175..67704682,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000203963 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10489629 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs10789228 | 0.87[ASN][1000 genomes] |
| rs10889673 | 0.90[ASN][1000 genomes] |
| rs10889674 | 0.90[ASN][1000 genomes] |
| rs10889675 | 0.85[CHD][hapmap] |
| rs10889676 | 0.86[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs10889677 | 0.93[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs11209023 | 0.86[ASN][1000 genomes] |
| rs11209025 | 0.87[ASN][1000 genomes] |
| rs12030107 | 0.91[ASN][1000 genomes] |
| rs12030948 | 0.93[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs12031203 | 0.91[ASN][1000 genomes] |
| rs12567232 | 0.86[ASN][1000 genomes] |
| rs12743974 | 0.90[ASN][1000 genomes] |
| rs1343152 | 0.93[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs2180294 | 0.90[ASN][1000 genomes] |
| rs2201841 | 0.93[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs35380856 | 0.90[ASN][1000 genomes] |
| rs35427944 | 0.80[ASN][1000 genomes] |
| rs4655529 | 0.87[ASN][1000 genomes] |
| rs6686950 | 0.91[ASN][1000 genomes] |
| rs7518660 | 0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs7523955 | 0.89[ASN][1000 genomes] |
| rs7543633 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1243 | chr1:67700289-67745337 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:67703800-67722000 | Weak transcription | K562 | blood |
