Variant report

Variant	rs10889983
Chromosome Location	chr1:73155280-73155281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10443263	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10493505	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889968	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10889984	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11209986	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11209988	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11209999	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11210017	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11210027	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11210030	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210053	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11582068	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11589065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024784	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12029382	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12038578	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12042334	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12047199	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12119472	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12119654	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12122859	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12126227	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12127252	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12128913	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12137919	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12141788	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12145832	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12406649	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12725368	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12726880	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12726957	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12727294	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12743848	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12749370	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1358040	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1525990	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1534173	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1998719	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2243622	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2265053	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2841185	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4128304	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4147191	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4255334	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4259588	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4292903	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4294370	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4372200	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4424448	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4638064	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4650145	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4650146	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6687187	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6691430	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6691978	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7514475	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7517246	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7520480	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7526444	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9326106	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9645299	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428101	chr1:73017520-73211351	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv871636	chr1:73048685-73274919	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv871181	chr1:73084221-73305593	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73154800-73155400	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links