Variant report

Variant	rs11210017
Chromosome Location	chr1:73136986-73136987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10443263	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10493505	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10889968	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10889983	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10889984	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11209986	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11209988	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11209999	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11210027	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11210030	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11210053	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11582068	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11589065	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12024784	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12029382	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12038578	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12042334	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12047199	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12119472	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12119654	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12122859	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12126227	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12127252	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12128913	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12137919	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12141788	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12145832	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12402702	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12406649	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12725368	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12726880	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12726957	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12727294	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12743848	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12749370	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1358040	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1525990	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1534173	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1998719	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2204499	0.82[CEU][hapmap]
rs2243622	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2265053	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2841185	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4128304	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4147191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4255334	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4259588	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4292903	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4294370	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4372200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4424448	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4638064	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4650145	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4650146	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6685232	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6687187	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6691430	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6691978	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7514475	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7517246	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7520480	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7526444	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9326106	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9645299	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422432	chr1:72821856-73148651	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv428101	chr1:73017520-73211351	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv871371	chr1:73048685-73152104	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv871636	chr1:73048685-73274919	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv871181	chr1:73084221-73305593	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73135800-73137200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr1:73136000-73137000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:73136200-73137400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr1:73136400-73137200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:73136400-73137200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:73136600-73137000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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