Variant report

Variant	rs11209999
Chromosome Location	chr1:73115316-73115317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10443263	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10493505	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10889968	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10889983	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889984	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11209986	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11209988	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11210017	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11210027	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11210030	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11210053	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11582068	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11589065	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12024784	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12029382	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12038578	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12042334	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12047199	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12119472	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12119654	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12122859	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12126227	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12127252	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12128913	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12137919	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12141788	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12145832	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12406649	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12725368	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12726880	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12726957	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12727294	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12743848	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12749370	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1358040	0.82[ASN][1000 genomes]
rs1525990	0.81[ASN][1000 genomes]
rs1534173	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1998719	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2243622	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2265053	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2841185	0.81[ASN][1000 genomes]
rs4128304	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4147191	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4255334	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4259588	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4292903	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4294370	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4372200	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4424448	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4638064	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4650145	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4650146	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687187	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6691430	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6691978	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7514475	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7517246	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7520480	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7526444	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9326106	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9645299	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422432	chr1:72821856-73148651	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv428101	chr1:73017520-73211351	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv871371	chr1:73048685-73152104	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv871636	chr1:73048685-73274919	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2763560	chr1:73077448-73122262	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv871181	chr1:73084221-73305593	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv871282	chr1:73095389-73116491	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73113400-73115800	Weak transcription	NHDF-Ad	bronchial
2	chr1:73114800-73116600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:73115000-73117200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:73115200-73115600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:73115200-73115600	Enhancers	Fetal Muscle Trunk	muscle
6	chr1:73115200-73115600	Enhancers	HMEC	breast
7	chr1:73115200-73115800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:73115200-73116600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:73115200-73117200	Enhancers	Fetal Lung	lung
10	chr1:73115200-73117800	Enhancers	Cortex derived primary cultured neurospheres	brain

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