Variant report

Variant	rs10890804
Chromosome Location	chr11:107941203-107941204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr11:107940324-107941300	K562	blood:	n/a	chr11:107940901-107940922
2	TCF12	chr11:107940905-107941454	SK-N-SH	brain:	n/a	n/a
3	TCF12	chr11:107940895-107941541	SK-N-SH	brain:	n/a	n/a
4	FOSL2	chr11:107940698-107941421	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
CUL5	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10789651	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10890800	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10890802	0.84[EUR][1000 genomes]
rs10890803	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10890805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890806	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10890808	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11212491	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11212505	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2271852	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3741051	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3858395	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3911815	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3950984	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4503496	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4508171	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4568970	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4568971	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4575229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754286	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7117111	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7130999	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7930830	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7935911	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7947410	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1047984	chr11:107794729-107950746	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107884400-107942000	Weak transcription	Esophagus	oesophagus
2	chr11:107890800-107975200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:107891000-107965800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:107891200-107966200	Weak transcription	Small Intestine	intestine
5	chr11:107896600-107962000	Weak transcription	Right Ventricle	heart
6	chr11:107902600-107974400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:107903600-107957600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr11:107906800-107942000	Weak transcription	Aorta	Aorta
9	chr11:107906800-107945600	Weak transcription	Spleen	Spleen
10	chr11:107906800-107947000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:107908200-107964000	Weak transcription	Fetal Heart	heart
12	chr11:107908400-107980600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:107914800-107955800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr11:107918200-107942000	Weak transcription	Gastric	stomach
15	chr11:107918200-107946200	Weak transcription	Pancreas	Pancrea
16	chr11:107923800-107965800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:107926200-107950200	Weak transcription	HMEC	breast
18	chr11:107927000-107950400	Weak transcription	Colonic Mucosa	Colon
19	chr11:107928200-107941400	Weak transcription	Brain Germinal Matrix	brain
20	chr11:107928200-107953600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:107928200-107962000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr11:107928200-107985200	Weak transcription	Psoas Muscle	Psoas
23	chr11:107928400-107946000	Weak transcription	HSMMtube	muscle
24	chr11:107928400-107950200	Weak transcription	Fetal Brain Male	brain
25	chr11:107928400-107950400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:107928600-107944400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr11:107928600-107944400	Weak transcription	HepG2	liver
28	chr11:107930400-107945600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:107931600-107942200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:107931800-107942000	Weak transcription	Left Ventricle	heart
31	chr11:107931800-107946200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:107933200-107950400	Weak transcription	Brain Substantia Nigra	brain
33	chr11:107934200-107941600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:107934200-107944400	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:107934200-107944400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr11:107934200-107944600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr11:107934200-107946000	Weak transcription	Brain Anterior Caudate	brain
38	chr11:107934800-107943000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:107934800-107943000	Weak transcription	NH-A	brain
40	chr11:107934800-107944600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr11:107935000-107942000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr11:107935000-107942000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:107935000-107942200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:107935200-107941600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr11:107935200-107944400	Weak transcription	Brain Angular Gyrus	brain
46	chr11:107935200-107946000	Weak transcription	Ovary	ovary
47	chr11:107935200-107957600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:107935400-107941400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:107935400-107942000	Weak transcription	Placenta	Placenta
50	chr11:107935400-107942200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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