Variant report

Variant	rs4508171
Chromosome Location	chr11:107934587-107934588
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10749914	0.82[CEU][hapmap]
rs10789651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890802	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10890803	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10890804	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10890805	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10890806	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10890808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11212491	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11212505	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11212524	0.82[CEU][hapmap]
rs2271852	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3741051	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3858395	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3911815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3950984	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4503496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4568970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4568971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4575229	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4754286	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7117111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7130999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7926222	0.82[CEU][hapmap]
rs7930830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7935911	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7947410	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1047984	chr11:107794729-107950746	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107884400-107942000	Weak transcription	Esophagus	oesophagus
2	chr11:107890800-107975200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:107891000-107965800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:107891200-107966200	Weak transcription	Small Intestine	intestine
5	chr11:107896600-107962000	Weak transcription	Right Ventricle	heart
6	chr11:107902600-107974400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:107903400-107935200	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:107903600-107957600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr11:107903800-107938000	Strong transcription	Dnd41	blood
10	chr11:107906000-107934600	Weak transcription	Brain Angular Gyrus	brain
11	chr11:107906800-107942000	Weak transcription	Aorta	Aorta
12	chr11:107906800-107945600	Weak transcription	Spleen	Spleen
13	chr11:107906800-107947000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:107908200-107964000	Weak transcription	Fetal Heart	heart
15	chr11:107908400-107980600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:107908600-107940800	Weak transcription	A549	lung
17	chr11:107908800-107939600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:107909200-107941000	Weak transcription	NHLF	lung
19	chr11:107914800-107937800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:107914800-107955800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr11:107916000-107938200	Strong transcription	Adipose Nuclei	Adipose
22	chr11:107916200-107935000	Strong transcription	Liver	Liver
23	chr11:107916200-107938600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:107916400-107934800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:107917000-107940200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr11:107917800-107937600	Strong transcription	Fetal Muscle Leg	muscle
27	chr11:107918200-107942000	Weak transcription	Gastric	stomach
28	chr11:107918200-107946200	Weak transcription	Pancreas	Pancrea
29	chr11:107921000-107938600	Strong transcription	Fetal Intestine Large	intestine
30	chr11:107922000-107935200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr11:107922200-107935200	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr11:107922400-107936600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:107922600-107938000	Strong transcription	Fetal Thymus	thymus
34	chr11:107922800-107935000	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:107923200-107934800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:107923200-107935400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:107923400-107935200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:107923800-107936600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr11:107923800-107965800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr11:107924200-107940800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr11:107924400-107935000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:107924400-107935200	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr11:107924400-107941000	Weak transcription	HUVEC	blood vessel
44	chr11:107924800-107935800	Weak transcription	Lung	lung
45	chr11:107924800-107938000	Strong transcription	Primary T cells from cord blood	blood
46	chr11:107925800-107936600	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:107926000-107936600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:107926200-107950200	Weak transcription	HMEC	breast
49	chr11:107926400-107935600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:107927000-107950400	Weak transcription	Colonic Mucosa	Colon

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