Variant report

Variant	rs10890806
Chromosome Location	chr11:107945097-107945098
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10789651	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10890800	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10890802	0.84[EUR][1000 genomes]
rs10890803	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10890804	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10890805	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10890808	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11212491	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11212505	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2271852	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3741051	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3858395	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3911815	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3950984	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4503496	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4508171	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4568970	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4568971	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4575229	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4754286	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7117111	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7130999	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7930830	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7935911	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7947410	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1047984	chr11:107794729-107950746	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107890800-107975200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:107891000-107965800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:107891200-107966200	Weak transcription	Small Intestine	intestine
4	chr11:107896600-107962000	Weak transcription	Right Ventricle	heart
5	chr11:107902600-107974400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:107903600-107957600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr11:107906800-107945600	Weak transcription	Spleen	Spleen
8	chr11:107906800-107947000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:107908200-107964000	Weak transcription	Fetal Heart	heart
10	chr11:107908400-107980600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:107914800-107955800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr11:107918200-107946200	Weak transcription	Pancreas	Pancrea
13	chr11:107923800-107965800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:107926200-107950200	Weak transcription	HMEC	breast
15	chr11:107927000-107950400	Weak transcription	Colonic Mucosa	Colon
16	chr11:107928200-107953600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:107928200-107962000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:107928200-107985200	Weak transcription	Psoas Muscle	Psoas
19	chr11:107928400-107946000	Weak transcription	HSMMtube	muscle
20	chr11:107928400-107950200	Weak transcription	Fetal Brain Male	brain
21	chr11:107928400-107950400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:107930400-107945600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:107931800-107946200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:107933200-107950400	Weak transcription	Brain Substantia Nigra	brain
25	chr11:107934200-107946000	Weak transcription	Brain Anterior Caudate	brain
26	chr11:107935200-107946000	Weak transcription	Ovary	ovary
27	chr11:107935200-107957600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:107935600-107954400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:107935800-107955800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:107937800-107953000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:107938000-107946200	Weak transcription	K562	blood
32	chr11:107938000-107946600	Weak transcription	Fetal Kidney	kidney
33	chr11:107938400-107968200	Weak transcription	Hela-S3	cervix
34	chr11:107939400-107948000	Strong transcription	Primary B cells from cord blood	blood
35	chr11:107940600-107948000	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr11:107940600-107951400	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr11:107940600-107956000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr11:107940800-107947000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr11:107941000-107946200	Weak transcription	Colon Smooth Muscle	Colon
40	chr11:107941000-107946800	Strong transcription	HUVEC	blood vessel
41	chr11:107941000-107954800	Weak transcription	Stomach Mucosa	stomach
42	chr11:107941000-107971800	Weak transcription	NHEK	skin
43	chr11:107941200-107950200	Weak transcription	A549	lung
44	chr11:107941200-107950200	Weak transcription	NHDF-Ad	bronchial
45	chr11:107941200-107955400	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr11:107941400-107946800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:107941400-107950400	Weak transcription	NHLF	lung
48	chr11:107941400-107953000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr11:107941400-107957000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:107941600-107948200	Strong transcription	Duodenum Mucosa	Duodenum

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