Variant report

Variant	rs10892453
Chromosome Location	chr11:119636367-119636368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11217501	0.80[ASN][1000 genomes]
rs12803325	0.86[ASN][1000 genomes]
rs34033074	0.83[ASN][1000 genomes]
rs34228131	0.85[ASN][1000 genomes]
rs34809912	0.84[EUR][1000 genomes]
rs4331115	0.83[ASN][1000 genomes]
rs4341549	0.85[ASN][1000 genomes]
rs4388901	0.85[ASN][1000 genomes]
rs4420283	0.86[ASN][1000 genomes]
rs59814528	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6589772	0.86[ASN][1000 genomes]
rs6589774	0.86[ASN][1000 genomes]
rs67007544	0.82[ASN][1000 genomes]
rs7103360	0.81[ASN][1000 genomes]
rs7929505	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119635200-119636400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr11:119635400-119647000	Weak transcription	Right Ventricle	heart
3	chr11:119635800-119641200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:119635800-119643800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:119636200-119636600	ZNF genes & repeats	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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