Variant report

Variant	rs59814528
Chromosome Location	chr11:119634962-119634963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10892451	0.90[EUR][1000 genomes]
rs10892453	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11217461	0.84[EUR][1000 genomes]
rs11217467	0.90[EUR][1000 genomes]
rs11217474	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11217476	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12277255	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12290653	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12803325	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34033074	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34228131	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34809912	0.85[EUR][1000 genomes]
rs34952981	0.80[EUR][1000 genomes]
rs35633147	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4331115	0.81[ASN][1000 genomes]
rs4341549	0.83[ASN][1000 genomes]
rs4388901	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4420283	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6589772	0.84[ASN][1000 genomes]
rs6589774	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7929505	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7950159	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119613600-119636000	Weak transcription	Right Atrium	heart
2	chr11:119625800-119635000	Weak transcription	Pancreas	Pancrea
3	chr11:119628600-119635000	Weak transcription	Brain Angular Gyrus	brain
4	chr11:119630800-119635000	Weak transcription	GM12878-XiMat	blood
5	chr11:119631000-119635200	Weak transcription	HMEC	breast
6	chr11:119631200-119635400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:119631600-119635000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:119631800-119635000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:119634000-119635800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:119634000-119636000	Enhancers	Fetal Muscle Leg	muscle
11	chr11:119634200-119635600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr11:119634200-119635600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:119634200-119635600	Enhancers	HSMMtube	muscle
14	chr11:119634400-119635000	Weak transcription	NH-A	brain
15	chr11:119634400-119635200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:119634400-119635200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:119634400-119635800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr11:119634600-119635200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:119634800-119635000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:119634800-119635200	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr11:119634800-119635400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:119634800-119635600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:119634800-119635600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:119634800-119635600	Enhancers	Brain Hippocampus Middle	brain
25	chr11:119634800-119635600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr11:119634800-119635800	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr11:119634800-119635800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:119634800-119636000	Enhancers	Liver	Liver

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