Variant report

Variant	rs35633147
Chromosome Location	chr11:119633448-119633449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10892451	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10892452	0.91[ASN][1000 genomes]
rs11217461	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11217467	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11217474	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11217476	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12277255	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290653	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34952981	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59814528	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7950159	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119613600-119636000	Weak transcription	Right Atrium	heart
2	chr11:119625800-119635000	Weak transcription	Pancreas	Pancrea
3	chr11:119626800-119634200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:119628600-119635000	Weak transcription	Brain Angular Gyrus	brain
5	chr11:119630800-119635000	Weak transcription	GM12878-XiMat	blood
6	chr11:119631000-119634800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:119631000-119635200	Weak transcription	HMEC	breast
8	chr11:119631200-119635400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:119631400-119634800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:119631600-119633600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:119631600-119634200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:119631600-119635000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:119631800-119634200	Weak transcription	Liver	Liver
14	chr11:119631800-119635000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links