Variant report

Variant	rs7950159
Chromosome Location	chr11:119625735-119625736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:119621036..119623872-chr11:119625364..119628565,3	MCF-7	breast:
2	chr11:119616914..119619843-chr11:119625598..119627418,2	K562	blood:
3	chr11:119622707..119625019-chr11:119625519..119627831,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PVRL1-3	chr11:119625678-119626324	ucscGeneNc_uc001pxd_1

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10892448	0.89[ASN][1000 genomes]
rs10892451	0.96[EUR][1000 genomes]
rs10892452	0.98[ASN][1000 genomes]
rs11217461	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11217467	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11217474	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11217476	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12277255	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12290653	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12365133	0.83[ASN][1000 genomes]
rs34952981	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35633147	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59814528	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1051769	chr11:119572865-119630769	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1037739	chr11:119592989-119630641	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119613600-119636000	Weak transcription	Right Atrium	heart
2	chr11:119614400-119628200	Weak transcription	Gastric	stomach
3	chr11:119622000-119629200	Enhancers	Brain Germinal Matrix	brain
4	chr11:119622200-119626200	Bivalent Enhancer	Fetal Stomach	stomach
5	chr11:119622400-119626800	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr11:119622800-119625800	Enhancers	Pancreas	Pancrea
7	chr11:119623400-119629600	Weak transcription	Spleen	Spleen
8	chr11:119623800-119631800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:119624000-119625800	Flanking Active TSS	GM12878-XiMat	blood
10	chr11:119624000-119627000	Weak transcription	Brain Substantia Nigra	brain
11	chr11:119624200-119626200	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:119624400-119626000	Weak transcription	Fetal Brain Male	brain
13	chr11:119624400-119626600	Weak transcription	HMEC	breast
14	chr11:119624400-119627600	Weak transcription	Fetal Brain Female	brain
15	chr11:119624400-119629800	Weak transcription	Liver	Liver
16	chr11:119624600-119627200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr11:119624600-119628000	Weak transcription	Brain Angular Gyrus	brain
18	chr11:119624800-119625800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr11:119625000-119626600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:119625200-119625800	Enhancers	Esophagus	oesophagus
21	chr11:119625200-119626600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:119625400-119626800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:119625600-119625800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
24	chr11:119625600-119627600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:119625600-119627800	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr11:119625600-119628200	Weak transcription	Left Ventricle	heart

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