Variant report

Variant	rs10892452
Chromosome Location	chr11:119630385-119630386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119617140..119619189-chr11:119629474..119631387,2	MCF-7	breast:
2	chr11:119622344..119624091-chr11:119630061..119631916,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10790342	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10790343	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10892448	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217458	0.93[EUR][1000 genomes]
rs11217460	0.89[EUR][1000 genomes]
rs11217461	0.82[ASN][1000 genomes]
rs11217466	0.97[EUR][1000 genomes]
rs11217467	0.99[ASN][1000 genomes]
rs11217471	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11217474	0.92[ASN][1000 genomes]
rs11217476	0.91[ASN][1000 genomes]
rs12277255	0.91[ASN][1000 genomes]
rs12290653	0.89[ASN][1000 genomes]
rs12365133	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34952981	0.81[ASN][1000 genomes]
rs35633147	0.91[ASN][1000 genomes]
rs4317995	0.89[EUR][1000 genomes]
rs4351828	0.96[EUR][1000 genomes]
rs7110679	0.95[EUR][1000 genomes]
rs7124166	0.98[EUR][1000 genomes]
rs7131676	0.99[EUR][1000 genomes]
rs7949076	0.93[EUR][1000 genomes]
rs7950159	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1051769	chr11:119572865-119630769	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1037739	chr11:119592989-119630641	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119613600-119636000	Weak transcription	Right Atrium	heart
2	chr11:119623800-119631800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:119625800-119635000	Weak transcription	Pancreas	Pancrea
4	chr11:119626600-119631200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:119626800-119634200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:119627800-119630400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:119628600-119635000	Weak transcription	Brain Angular Gyrus	brain
8	chr11:119628800-119631000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:119629000-119630400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:119629000-119630600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:119629000-119630600	Enhancers	NHDF-Ad	bronchial
12	chr11:119629000-119630800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:119629000-119631000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:119629000-119631000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:119629200-119630800	Enhancers	GM12878-XiMat	blood
16	chr11:119629200-119631000	Enhancers	HMEC	breast
17	chr11:119629200-119631200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:119629200-119631400	Weak transcription	Brain Germinal Matrix	brain
19	chr11:119629400-119630600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:119629400-119630800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:119629400-119631400	Enhancers	HSMMtube	muscle
22	chr11:119629600-119630600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:119629600-119630600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr11:119629600-119630600	Enhancers	Hela-S3	cervix
25	chr11:119629600-119630800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:119629600-119630800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:119629600-119630800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
28	chr11:119629800-119630600	Enhancers	Stomach Mucosa	stomach
29	chr11:119629800-119631000	Enhancers	K562	blood
30	chr11:119629800-119631600	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr11:119629800-119631600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr11:119629800-119631800	Enhancers	Liver	Liver
33	chr11:119630000-119630400	Enhancers	H1 Cell Line	embryonic stem cell
34	chr11:119630000-119630400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:119630000-119630400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:119630000-119630400	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr11:119630000-119630400	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr11:119630000-119630600	Flanking Active TSS	Osteobl	bone
39	chr11:119630000-119630800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:119630000-119630800	Flanking Active TSS	HSMM	muscle
41	chr11:119630000-119631000	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr11:119630000-119631000	Enhancers	Esophagus	oesophagus
43	chr11:119630000-119631000	Enhancers	Fetal Muscle Leg	muscle
44	chr11:119630000-119631200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr11:119630200-119630400	Enhancers	NH-A	brain
46	chr11:119630200-119630400	Enhancers	NHEK	skin
47	chr11:119630200-119630600	Enhancers	NHLF	lung
48	chr11:119630200-119630800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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