Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119631709..119634169-chr11:119639966..119641881,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10790342	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10790343	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10790344	0.89[CEU][hapmap]
rs10892448	0.90[EUR][1000 genomes]
rs10892451	0.91[ASN][1000 genomes]
rs10892452	0.95[EUR][1000 genomes]
rs10892459	0.80[EUR][1000 genomes]
rs10892460	0.80[EUR][1000 genomes]
rs10892461	0.80[EUR][1000 genomes]
rs11217458	0.88[EUR][1000 genomes]
rs11217460	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11217466	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11217471	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11217501	0.80[EUR][1000 genomes]
rs11217502	0.80[EUR][1000 genomes]
rs11217503	0.80[EUR][1000 genomes]
rs11606569	0.80[EUR][1000 genomes]
rs12365133	0.89[EUR][1000 genomes]
rs1466051	0.81[EUR][1000 genomes]
rs1466052	0.80[EUR][1000 genomes]
rs35662046	0.80[EUR][1000 genomes]
rs4317995	0.90[EUR][1000 genomes]
rs4331115	0.80[EUR][1000 genomes]
rs4351828	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7124166	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7131676	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7936400	0.81[EUR][1000 genomes]
rs7949076	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119613600-119636000	Weak transcription	Right Atrium	heart
2	chr11:119625800-119635000	Weak transcription	Pancreas	Pancrea
3	chr11:119626800-119634200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:119628600-119635000	Weak transcription	Brain Angular Gyrus	brain
5	chr11:119630800-119635000	Weak transcription	GM12878-XiMat	blood
6	chr11:119631000-119634800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:119631000-119635200	Weak transcription	HMEC	breast
8	chr11:119631200-119635400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:119631400-119634800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:119631600-119634200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:119631600-119635000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:119631800-119634200	Weak transcription	Liver	Liver
13	chr11:119631800-119635000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:119633600-119634400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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