Variant report

Variant	rs10892461
Chromosome Location	chr11:119654807-119654808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119651148..119653281-chr11:119653649..119656583,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10790344	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10790345	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10892454	0.90[EUR][1000 genomes]
rs10892456	0.94[EUR][1000 genomes]
rs10892457	0.94[EUR][1000 genomes]
rs10892458	0.94[EUR][1000 genomes]
rs10892459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892460	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217495	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11217501	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11217502	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217503	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12222723	0.94[EUR][1000 genomes]
rs12803325	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1466051	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34033074	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs34228131	0.94[ASN][1000 genomes]
rs35121417	0.83[EUR][1000 genomes]
rs35662046	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4258392	0.94[EUR][1000 genomes]
rs4269933	0.94[EUR][1000 genomes]
rs4301801	0.94[EUR][1000 genomes]
rs4331115	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4341549	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4388901	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4408323	0.94[EUR][1000 genomes]
rs4418818	0.94[EUR][1000 genomes]
rs4420283	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4608095	0.94[EUR][1000 genomes]
rs5020632	0.94[EUR][1000 genomes]
rs5020633	0.94[EUR][1000 genomes]
rs5026369	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6589772	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6589774	0.94[ASN][1000 genomes]
rs6589776	0.90[EUR][1000 genomes]
rs67007544	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7103360	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7110679	0.80[EUR][1000 genomes]
rs7119690	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7926574	0.95[EUR][1000 genomes]
rs7929505	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7936400	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7942259	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9326253	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv528824	chr11:119650105-119661809	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119652400-119655000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:119652600-119655000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:119652600-119655400	ZNF genes & repeats	GM12878-XiMat	blood
4	chr11:119653800-119657200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:119653800-119657400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:119653800-119657400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:119654400-119659800	Weak transcription	Fetal Heart	heart
8	chr11:119654600-119657600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:119654800-119656200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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