Variant report

Variant	rs5020632
Chromosome Location	chr11:119649863-119649864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119645625..119647628-chr11:119648979..119651393,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10790344	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10790345	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10892454	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10892456	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10892457	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10892458	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10892459	0.94[EUR][1000 genomes]
rs10892460	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10892461	0.94[EUR][1000 genomes]
rs11217495	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11217501	0.94[EUR][1000 genomes]
rs11217502	0.94[EUR][1000 genomes]
rs11217503	0.94[EUR][1000 genomes]
rs11606569	0.94[EUR][1000 genomes]
rs12222723	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466051	0.94[EUR][1000 genomes]
rs1466052	0.94[EUR][1000 genomes]
rs34809912	0.92[ASN][1000 genomes]
rs35121417	0.93[ASN][1000 genomes]
rs35662046	0.94[EUR][1000 genomes]
rs4258392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4269933	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4301801	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4331115	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4341549	0.94[EUR][1000 genomes]
rs4408323	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4418818	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4608095	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5020633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5026369	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6589772	0.91[EUR][1000 genomes]
rs6589776	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67007544	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7103360	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7926574	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7936400	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7942259	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9326253	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119641400-119652600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:119645200-119652800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:119647000-119654400	Enhancers	Fetal Heart	heart
4	chr11:119647400-119650000	Weak transcription	Right Atrium	heart
5	chr11:119647600-119650200	Weak transcription	Ovary	ovary
6	chr11:119648600-119653200	Enhancers	Right Ventricle	heart
7	chr11:119648800-119650400	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr11:119649000-119650800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr11:119649200-119650000	Enhancers	Left Ventricle	heart
10	chr11:119649600-119652600	Weak transcription	GM12878-XiMat	blood
11	chr11:119649600-119653000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:119649600-119653400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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