Variant report

Variant	rs5026369
Chromosome Location	chr11:119652214-119652215
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119651148..119653281-chr11:119653649..119656583,2	MCF-7	breast:
2	chr11:119641454..119644378-chr11:119651426..119653026,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10790344	0.95[EUR][1000 genomes]
rs10790345	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10892454	0.86[EUR][1000 genomes]
rs10892456	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10892457	0.90[EUR][1000 genomes]
rs10892458	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10892459	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10892460	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10892461	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11217495	0.90[EUR][1000 genomes]
rs11217501	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11217502	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11217503	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11606569	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12222723	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12803325	0.91[ASN][1000 genomes]
rs1466051	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1466052	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34033074	0.94[ASN][1000 genomes]
rs34228131	0.92[ASN][1000 genomes]
rs35121417	0.83[EUR][1000 genomes]
rs35662046	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4258392	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4269933	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4301801	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4331115	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4341549	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4388901	0.92[ASN][1000 genomes]
rs4408323	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4418818	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4420283	0.91[ASN][1000 genomes]
rs4608095	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs5020632	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs5020633	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6589772	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6589774	0.91[ASN][1000 genomes]
rs6589776	0.90[EUR][1000 genomes]
rs67007544	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7103360	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7926574	0.91[EUR][1000 genomes]
rs7929505	0.91[ASN][1000 genomes]
rs7936400	0.94[EUR][1000 genomes]
rs7942259	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9326253	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv528824	chr11:119650105-119661809	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119641400-119652600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:119645200-119652800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:119647000-119654400	Enhancers	Fetal Heart	heart
4	chr11:119648600-119653200	Enhancers	Right Ventricle	heart
5	chr11:119649600-119652600	Weak transcription	GM12878-XiMat	blood
6	chr11:119649600-119653000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:119649600-119653400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:119650000-119652600	Enhancers	Right Atrium	heart
9	chr11:119650400-119653200	Enhancers	Fetal Muscle Leg	muscle
10	chr11:119651400-119652600	Weak transcription	Ovary	ovary
11	chr11:119652000-119652800	Weak transcription	Left Ventricle	heart
12	chr11:119652200-119654200	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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