Variant report

Variant	rs7926574
Chromosome Location	chr11:119641049-119641050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119631709..119634169-chr11:119639966..119641881,2	MCF-7	breast:
2	chr11:119640548..119642898-chr11:119644678..119646239,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10790344	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10790345	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10892454	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10892456	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10892457	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10892458	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10892459	0.95[EUR][1000 genomes]
rs10892460	0.95[EUR][1000 genomes]
rs10892461	0.95[EUR][1000 genomes]
rs11217495	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11217501	0.95[EUR][1000 genomes]
rs11217502	0.95[EUR][1000 genomes]
rs11217503	0.95[EUR][1000 genomes]
rs11606569	0.95[EUR][1000 genomes]
rs12222723	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1466051	0.95[EUR][1000 genomes]
rs1466052	0.95[EUR][1000 genomes]
rs34809912	0.99[ASN][1000 genomes]
rs35121417	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35662046	0.95[EUR][1000 genomes]
rs4258392	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4269933	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4301801	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4331115	0.95[EUR][1000 genomes]
rs4341549	0.95[EUR][1000 genomes]
rs4408323	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4418818	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4608095	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5020632	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5020633	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5026369	0.91[EUR][1000 genomes]
rs6589772	0.92[EUR][1000 genomes]
rs6589776	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67007544	0.89[EUR][1000 genomes]
rs7103360	0.90[EUR][1000 genomes]
rs7131676	0.80[EUR][1000 genomes]
rs7936400	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7942259	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9326253	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119635400-119647000	Weak transcription	Right Ventricle	heart
2	chr11:119635800-119641200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:119635800-119643800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:119641000-119641400	Enhancers	GM12878-XiMat	blood

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