Variant report

Variant	rs9326253
Chromosome Location	chr11:119644451-119644452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10750165	0.84[ASN][1000 genomes]
rs10790344	0.88[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10790345	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10892454	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10892456	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10892457	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10892458	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10892459	0.93[EUR][1000 genomes]
rs10892460	0.93[EUR][1000 genomes]
rs10892461	0.93[EUR][1000 genomes]
rs11217495	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11217496	0.85[ASN][1000 genomes]
rs11217501	0.93[EUR][1000 genomes]
rs11217502	0.93[EUR][1000 genomes]
rs11217503	0.93[EUR][1000 genomes]
rs11606569	0.93[EUR][1000 genomes]
rs12222723	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1466051	0.93[EUR][1000 genomes]
rs1466052	0.93[EUR][1000 genomes]
rs35121417	0.81[AMR][1000 genomes]
rs35662046	0.93[EUR][1000 genomes]
rs4258392	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4269933	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4301801	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4331115	0.93[EUR][1000 genomes]
rs4341549	0.92[EUR][1000 genomes]
rs4408323	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4418818	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4608095	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs5020632	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs5020633	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs5026369	0.89[EUR][1000 genomes]
rs6589772	0.89[EUR][1000 genomes]
rs6589776	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67007544	0.87[EUR][1000 genomes]
rs7103360	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7926574	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7936400	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7942259	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9326253	CD3E	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119635400-119647000	Weak transcription	Right Ventricle	heart
2	chr11:119641400-119649200	Weak transcription	GM12878-XiMat	blood
3	chr11:119641400-119652600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:119641600-119645000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:119641800-119644800	Enhancers	Fetal Brain Female	brain
6	chr11:119642800-119645000	Enhancers	Brain Hippocampus Middle	brain
7	chr11:119642800-119645800	Enhancers	Brain Germinal Matrix	brain
8	chr11:119643000-119644600	Enhancers	Brain Anterior Caudate	brain
9	chr11:119643000-119644600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr11:119643000-119644800	Enhancers	Brain Substantia Nigra	brain
11	chr11:119644400-119644800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:119644400-119649400	Weak transcription	Brain Angular Gyrus	brain

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